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CcUC09G180130 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC09G180130
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionF-box protein At5g49610-like
Genome locationCicolChr09:30978209..30981715
RNA-Seq ExpressionCcUC09G180130
SyntenyCcUC09G180130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043777.1 F-box protein [Cucumis melo var. makuwa]1.4e-0576.32Show/hide
Query:  HILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG
        H+LSFVSP P NNSPPL+LSL+FLP  NPQI+ VAPNG
Subjt:  HILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG

XP_008443600.1 PREDICTED: F-box protein At5g49610-like [Cucumis melo]6.9e-0850.57Show/hide
Query:  QVGKIRGLSNSYNKA------KLLVSQPNTTSTHLKCFFFET-LNFNVKHILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG
        Q GKI+ LS  YNK       K L+S+ N +   L  F  ++  + +  H+LSFVSP P NNSPPL+LSL+FLP  NPQI+ VAPNG
Subjt:  QVGKIRGLSNSYNKA------KLLVSQPNTTSTHLKCFFFET-LNFNVKHILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG

XP_022934602.1 F-box protein At5g49610-like [Cucurbita moschata]2.9e-0646.43Show/hide
Query:  VGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG
        VGKIR LS S+N+A          + H   L  F  ++L       +H+LSF +P+P NSPPL+LSLSFLP   PQ+  VAPNG
Subjt:  VGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG

XP_022983376.1 F-box protein At5g49610-like [Cucurbita maxima]4.4e-0746.51Show/hide
Query:  YQVGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG
        + VGKIR LS S+N+A          + H   L  F  ++L       +H+LSF +PQP NSPPL+LSLSFLP  +PQ+  VAPNG
Subjt:  YQVGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG

XP_023528881.1 F-box protein At5g49610-like [Cucurbita pepo subsp. pepo]1.3e-0645.35Show/hide
Query:  YQVGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG
        + VGKIR LS S+N+A          + H   L  F  ++L       +H+LSF +P+P NSPPL+LSLSFLP  +PQ+  VAPNG
Subjt:  YQVGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG

TrEMBL top hitse value%identityAlignment
A0A1S3B7Y4 F-box protein At5g49610-like3.3e-0850.57Show/hide
Query:  QVGKIRGLSNSYNKA------KLLVSQPNTTSTHLKCFFFET-LNFNVKHILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG
        Q GKI+ LS  YNK       K L+S+ N +   L  F  ++  + +  H+LSFVSP P NNSPPL+LSL+FLP  NPQI+ VAPNG
Subjt:  QVGKIRGLSNSYNKA------KLLVSQPNTTSTHLKCFFFET-LNFNVKHILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG

A0A5A7TPP2 F-box protein6.9e-0676.32Show/hide
Query:  HILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG
        H+LSFVSP P NNSPPL+LSL+FLP  NPQI+ VAPNG
Subjt:  HILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG

A0A5D3DNY0 F-box protein6.9e-0676.32Show/hide
Query:  HILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG
        H+LSFVSP P NNSPPL+LSL+FLP  NPQI+ VAPNG
Subjt:  HILSFVSPQP-NNSPPLDLSLSFLPRCNPQIQVVAPNG

A0A6J1F395 F-box protein At5g49610-like1.4e-0646.43Show/hide
Query:  VGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG
        VGKIR LS S+N+A          + H   L  F  ++L       +H+LSF +P+P NSPPL+LSLSFLP   PQ+  VAPNG
Subjt:  VGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG

A0A6J1J214 F-box protein At5g49610-like2.2e-0746.51Show/hide
Query:  YQVGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG
        + VGKIR LS S+N+A          + H   L  F  ++L       +H+LSF +PQP NSPPL+LSLSFLP  +PQ+  VAPNG
Subjt:  YQVGKIRGLSNSYNKAKLLVSQPNTTSTH---LKCFFFETLNFNV---KHILSFVSPQPNNSPPLDLSLSFLPRCNPQIQVVAPNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATGGCGTACTGAACCTGTGGAATATAAGGAAAGTTGGGAGTATTGCGAGAAATTTTGGACAGAGCTATGGATGGAGAAATCTTACTACGAAAGAATTCTG
ACCAAAAGGGTCGGGATGGGCCAGGTCGGCCCCATAATGAGGTTGGTTGCCCCTTACCAAGTTGGTAAAATTCGAGGCCTGTCAAACTCCTATAACAAAGCTAAA
TTGTTAGTATCCCAACCCAACACAACGTCAACCCATCTGAAATGTTTCTTCTTCGAAACTCTCAATTTCAATGTCAAACACATATTGTCCTTTGTTTCTCCTCAA
CCCAACAACTCTCCACCCTTGGATTTATCCTTGAGTTTCCTCCCTCGTTGCAACCCTCAAATTCAAGTCGTTGCTCCAAATGGTCGTTCTCTTATGGGAAACTCA
ACACCCAATCCACTACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATGGCGTACTGAACCTGTGGAATATAAGGAAAGTTGGGAGTATTGCGAGAAATTTTGGACAGAGCTATGGATGGAGAAATCTTACTACGAAAGAATTCTG
ACCAAAAGGGTCGGGATGGGCCAGGTCGGCCCCATAATGAGGTTGGTTGCCCCTTACCAAGTTGGTAAAATTCGAGGCCTGTCAAACTCCTATAACAAAGCTAAA
TTGTTAGTATCCCAACCCAACACAACGTCAACCCATCTGAAATGTTTCTTCTTCGAAACTCTCAATTTCAATGTCAAACACATATTGTCCTTTGTTTCTCCTCAA
CCCAACAACTCTCCACCCTTGGATTTATCCTTGAGTTTCCTCCCTCGTTGCAACCCTCAAATTCAAGTCGTTGCTCCAAATGGTCGTTCTCTTATGGGAAACTCA
ACACCCAATCCACTACAATAA
Protein sequenceShow/hide protein sequence
MGWRTEPVEYKESWEYCEKFWTELWMEKSYYERILTKRVGMGQVGPIMRLVAPYQVGKIRGLSNSYNKAKLLVSQPNTTSTHLKCFFFETLNFNVKHILSFVSPQ
PNNSPPLDLSLSFLPRCNPQIQVVAPNGRSLMGNSTPNPLQ