; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G190410 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G190410
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNA polymerase II elongation factor
Genome locationCicolChr10:5411403..5412059
RNA-Seq ExpressionCcUC10G190410
SyntenyCcUC10G190410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-10087.1Show/hide
Query:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        ETKDSG  AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL
        DPNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TIFL
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL

Query:  FCFAAIVFAASKFILCG
         CF+ IVF ASKFILCG
Subjt:  FCFAAIVFAASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]8.4e-10389.04Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAETKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI 
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF

Query:  LFCFAAIVFAASKFILCGF
        L  F+AI+F  SKFILCGF
Subjt:  LFCFAAIVFAASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]3.8e-10389.95Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA+TKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQREKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI I 
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF

Query:  LFCFAAIVFAASKFILCGF
        L  F+AIVFAASKFILCGF
Subjt:  LFCFAAIVFAASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]6.7e-10086.57Show/hide
Query:  ETKDSG-AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD
        ET+DSG AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCCYFFLFHALSLTLL+TSSD
Subjt:  ETKDSG-AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD

Query:  PNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFLF
        PNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L 
Subjt:  PNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFLF

Query:  CFAAIVFAASKFILCG
        CF+ IVF ASKFILCG
Subjt:  CFAAIVFAASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]3.8e-11194.5Show/hide
Query:  MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        MAETKDSGAHIVEIPVEQEN TQNQN MISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSS
Subjt:  MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL
        DPNVC+KWWV AVAMGATSGVFVI+VQLKLWLYWKASGQLQREK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL

Query:  FCFAAIVFAASKFILCGF
          F+AIVFAASKFILC F
Subjt:  FCFAAIVFAASKFILCGF

TrEMBL top hitse value%identityAlignment
A0A0A0L2U7 Uncharacterized protein4.1e-10389.04Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAETKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI 
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF

Query:  LFCFAAIVFAASKFILCGF
        L  F+AI+F  SKFILCGF
Subjt:  LFCFAAIVFAASKFILCGF

A0A1S3BL81 uncharacterized protein LOC1034910491.8e-10389.95Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA+TKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQREKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI I 
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIF

Query:  LFCFAAIVFAASKFILCGF
        L  F+AIVFAASKFILCGF
Subjt:  LFCFAAIVFAASKFILCGF

A0A2P6QLA8 Uncharacterized protein5.9e-7061.54Show/hide
Query:  MAETKDSGAHIVEIPVEQENQTQNQNLM--ISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYT
        MAE KD   H+VEIPV++E+Q +  + M  IS IQ+HPL +ISES GHLLLLKLW+R+E LFG RI RRET+M+ ++++IFQLCC+F +FHA  LT+L+T
Subjt:  MAETKDSGAHIVEIPVEQENQTQNQNLM--ISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYT

Query:  S---SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNF
        S   S+   C+KWW+ ++   +TS VFV++VQ+ LW YWK  GQLQREK ENRAL RC+QELRMKG+ F+LSKEPQ G R+KSSSVEIKW P+TW S+N 
Subjt:  S---SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNF

Query:  ITIFLFCFAAIVFAASKFILC
        ITI L CFA +VF ASK +LC
Subjt:  ITIFLFCFAAIVFAASKFILC

A0A6J1EWB5 uncharacterized protein LOC1114387091.0e-9886.18Show/hide
Query:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        ETKDSG  AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL
        DPNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+TI L
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL

Query:  FCFAAIVFAASKFILCG
         CF+ IVF ASKFILCG
Subjt:  FCFAAIVFAASKFILCG

A0A6J1HN07 uncharacterized protein LOC1114651144.2e-10087.1Show/hide
Query:  ETKDSGA--HIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        ETKDSGA  HIVEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ETKDSGA--HIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL
        DPNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TIFL
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFL

Query:  FCFAAIVFAASKFILCG
         CF+ IVF ASKFILCG
Subjt:  FCFAAIVFAASKFILCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G12870.1 unknown protein3.4e-2535.26Show/hide
Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCRKWWVAAVAMGATSGVFVIMVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LL+       +S+  + C++ W+ ++    +S   +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCRKWWVAAVAMGATSGVFVIMVQ

Query:  LKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITIFLFCFAAIVFAASKFILC
         K  +       L+REK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+F F  + +V A  + ILC
Subjt:  LKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITIFLFCFAAIVFAASKFILC

AT5G56120.1 unknown protein3.1e-6353.36Show/hide
Query:  MAETKDSGAHIVEIPVEQENQTQNQNL-----------MISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH
        MA TKDS  H+VEIPV++E++ + Q             ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCC+F +FH
Subjt:  MAETKDSGAHIVEIPVEQENQTQNQNL-----------MISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH

Query:  ALSLTLLYTSSDPN---------VCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS
            TL+Y+SS  +         VC+KWW+ +    ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKGS F+LSKEP  G RMKSSS
Subjt:  ALSLTLLYTSSDPN---------VCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS

Query:  VEIKWGPLTWFSRNFITIFLFCFAAIVFAASKFILCGF
        VEIKW P+TWFS+  ITI L C A + F  SKFILCGF
Subjt:  VEIKWGPLTWFSRNFITIFLFCFAAIVFAASKFILCGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAACCACCCATT
GAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGGGATGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAATGGAGTCTT
TAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAATGGTGGGTT
GCGGCGGTGGCGATGGGGGCGACGTCGGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAAGAGTGAAAA
CAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTGTGGAGATTA
AATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTTTCTTTTTTGCTTTGCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAACCACCCATT
GAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGGGATGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAATGGAGTCTT
TAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAATGGTGGGTT
GCGGCGGTGGCGATGGGGGCGACGTCGGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAAGAGTGAAAA
CAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTGTGGAGATTA
AATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTTTCTTTTTTGCTTTGCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTAA
Protein sequenceShow/hide protein sequence
MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWV
AAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIFLFCFAAIVFAASKFILCGF