; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G190520 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G190520
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionexopolygalacturonase-like
Genome locationCicolChr10:5586221..5592393
RNA-Seq ExpressionCcUC10G190520
SyntenyCcUC10G190520
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065793.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.4e-0466.67Show/hide
Query:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        K   I   S  LS AWSE C  NG GVVL PA GRFLVLPLLLQG
Subjt:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

XP_016900599.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]1.4e-0466.67Show/hide
Query:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        K   I   S  LS AWSE C  NG GVVL PA GRFLVLPLLLQG
Subjt:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

XP_031738767.1 exopolygalacturonase [Cucumis sativus]6.2e-0564.44Show/hide
Query:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        K   I   S  LS AWSE C  NG G+VL PA+GRFLVLPLLLQG
Subjt:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

XP_038904214.1 exopolygalacturonase-like [Benincasa hispida]9.0e-1261.64Show/hide
Query:  MVSIMILLYICKYCNAQHKFW-------KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        ++SIMILL ICKYCNAQ K +       K   I   S  LS AWSE CG +G GVVL PA+GRFLVLPLLLQG
Subjt:  MVSIMILLYICKYCNAQHKFW-------KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

XP_038904218.1 exopolygalacturonase-like [Benincasa hispida]2.1e-0585.29Show/hide
Query:  LSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        LSRAWSE CG NG GVVL PA GRFLVLPLLLQG
Subjt:  LSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

TrEMBL top hitse value%identityAlignment
A0A0A0L7H9 Uncharacterized protein3.0e-0564.44Show/hide
Query:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        K   I   S  LS AWSE C  NG G+VL PA+GRFLVLPLLLQG
Subjt:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

A0A1S4DX91 exopolygalacturonase-like6.7e-0566.67Show/hide
Query:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        K   I   S  LS AWSE C  NG GVVL PA GRFLVLPLLLQG
Subjt:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

A0A5D3B9J1 Exopolygalacturonase-like6.7e-0566.67Show/hide
Query:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        K   I   S  LS AWSE C  NG GVVL PA GRFLVLPLLLQG
Subjt:  KNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

A0A5D3BB58 Exopolygalacturonase-like9.7e-0472.22Show/hide
Query:  ITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        + LS AWS  C  NG GVVL PA+GRFLVLPLLLQG
Subjt:  ITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

A0A6J1EVV0 exopolygalacturonase-like3.3e-0446.58Show/hide
Query:  MVSIMILLYICKYCNAQHKFWKNKTI-------RSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG
        +VSI++LL I + C A+ K +    +          S  L  AWSE C  NG GV+L PA GRFLVLP+LLQG
Subjt:  MVSIMILLYICKYCNAQHKFWKNKTI-------RSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCCATTATGATATTGCTTTACATTTGTAAATATTGTAATGCCCAACATAAGTTTTGGAAAAACAAAACTATTAGAAGCCCAAGCATCACATTAAGTAGGGCATG
GAGCGAAGGTTGTGGATATAATGGAGTTGGTGTGGTTTTAAAACCAGCCCGGGGGAGGTTCTTGGTTTTGCCATTGCTGCTTCAAGGATTACAGGACTTTTCCCTTGTTG
AGATCTTGAACCAACTTGGTGTGCTTTTACTGACTTTTCTTAGTGTGATTTCACAAACTGAGGATCTGGCTAGGTTCTCATCTACTCTGTCAATCTTCTTTGTTAGCATT
TACCGACTTGACCACACGGTTGACACTCACTGGTTGAGGTTGAGGAACACCACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCCATTATGATATTGCTTTACATTTGTAAATATTGTAATGCCCAACATAAGTTTTGGAAAAACAAAACTATTAGAAGCCCAAGCATCACATTAAGTAGGGCATG
GAGCGAAGGTTGTGGATATAATGGAGTTGGTGTGGTTTTAAAACCAGCCCGGGGGAGGTTCTTGGTTTTGCCATTGCTGCTTCAAGGATTACAGGACTTTTCCCTTGTTG
AGATCTTGAACCAACTTGGTGTGCTTTTACTGACTTTTCTTAGTGTGATTTCACAAACTGAGGATCTGGCTAGGTTCTCATCTACTCTGTCAATCTTCTTTGTTAGCATT
TACCGACTTGACCACACGGTTGACACTCACTGGTTGAGGTTGAGGAACACCACCTAG
Protein sequenceShow/hide protein sequence
MVSIMILLYICKYCNAQHKFWKNKTIRSPSITLSRAWSEGCGYNGVGVVLKPARGRFLVLPLLLQGLQDFSLVEILNQLGVLLLTFLSVISQTEDLARFSSTLSIFFVSI
YRLDHTVDTHWLRLRNTT