CuGenDBv2

Gene ID	CcUC10G190600
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA mismatch repair protein MSH5
Genome location	CicolChr10:5665301..5666795
RNA-Seq Expression	CcUC10G190600
Synteny	CcUC10G190600
Gene Ontology terms	GO:0010777 - meiotic mismatch repair involved in reciprocal meiotic recombination (biological process) GO:0051026 - chiasma assembly (biological process) GO:0000794 - condensed nuclear chromosome (cellular component) GO:0043073 - germ cell nucleus (cellular component) GO:0005524 - ATP binding (molecular function) GO:0030983 - mismatched DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_038903564.1 DNA mismatch repair protein MSH5 isoform X1 [Benincasa hispida]

5.4e-56

95.65

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC+KHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAAL+RSD MSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERIC++S
Subjt:  MDDGLNIKERICYVS

XP_038903565.1 DNA mismatch repair protein MSH5 isoform X2 [Benincasa hispida]

5.4e-56

95.65

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC+KHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAAL+RSD MSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERIC++S
Subjt:  MDDGLNIKERICYVS

XP_038903566.1 DNA mismatch repair protein MSH5 isoform X3 [Benincasa hispida]

5.4e-56

95.65

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC+KHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAAL+RSD MSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERIC++S
Subjt:  MDDGLNIKERICYVS

XP_038903567.1 DNA mismatch repair protein MSH5 isoform X4 [Benincasa hispida]

5.4e-56

95.65

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC+KHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAAL+RSD MSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERIC++S
Subjt:  MDDGLNIKERICYVS

XP_038903568.1 DNA mismatch repair protein MSH5 isoform X5 [Benincasa hispida]

5.4e-56

95.65

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC+KHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAAL+RSD MSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERIC++S
Subjt:  MDDGLNIKERICYVS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BM83 DNA mismatch repair protein MSH5

3.4e-56

95.65

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MACVKHGQ+VGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAAL+RSD MS+APTVKLVKSSIFSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERICY+S
Subjt:  MDDGLNIKERICYVS

A0A6J1DCL3 DNA mismatch repair protein MSH5

1.1e-54

92.17

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Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSM++PLI+LVKYQA+PLMIYTSTKSEESFLAAL+RSD MSEAPT+KLVKSSIFSYEQAWHRL+YLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERICY+S
Subjt:  MDDGLNIKERICYVS

A0A6J1EVW8 DNA mismatch repair protein MSH5 isoform X2

4.2e-54

93.04

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Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MACVKHGQRVGVSYYDSSIRQLHVL+VWEDGSMEYPLIDLVKYQAKPLMIY STKSEESFLAAL+RSD +SEAPTVKLVKSSIFSYEQAWHRL+YLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERI Y+S
Subjt:  MDDGLNIKERICYVS

A0A6J1EW67 DNA mismatch repair protein MSH5 isoform X3

4.2e-54

93.04

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Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MACVKHGQRVGVSYYDSSIRQLHVL+VWEDGSMEYPLIDLVKYQAKPLMIY STKSEESFLAAL+RSD +SEAPTVKLVKSSIFSYEQAWHRL+YLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERI Y+S
Subjt:  MDDGLNIKERICYVS

A0A6J1F1R7 DNA mismatch repair protein MSH5 isoform X1

4.2e-54

93.04

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Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MACVKHGQRVGVSYYDSSIRQLHVL+VWEDGSMEYPLIDLVKYQAKPLMIY STKSEESFLAAL+RSD +SEAPTVKLVKSSIFSYEQAWHRL+YLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERI Y+S
Subjt:  MDDGLNIKERICYVS

SwissProt top hits

e value

%identity

Alignment

F4JEP5 DNA mismatch repair protein MSH5

2.6e-45

73.91

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC++HG+RVGVSYYD S+RQLHVLE WE+   ++ LI++VKYQAKP +IY STKSEESF+AAL+++D   E   VKLVKSS FSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERICY+S
Subjt:  MDDGLNIKERICYVS

Q6L4V0 DNA mismatch repair protein MSH5

8.6e-41

65.22

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MACV  G+RVG++YYDSS+ QL VLE+WED + ++PLIDLVKYQ+KP  IYTSTK++E+ L AL+R+D   EAP VKL+KSS FSYEQAWHRL+YL+V  
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MD+GL++KERIC+++
Subjt:  MDDGLNIKERICYVS

Arabidopsis top hits

e value

%identity

Alignment

AT3G20475.1 MUTS-homologue 5

1.8e-46

73.91

Show/hide

Query:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG
        MAC++HG+RVGVSYYD S+RQLHVLE WE+   ++ LI++VKYQAKP +IY STKSEESF+AAL+++D   E   VKLVKSS FSYEQAWHRLVYLRVTG
Subjt:  MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTG

Query:  MDDGLNIKERICYVS
        MDDGLNIKERICY+S
Subjt:  MDDGLNIKERICYVS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTGTGTCAAACATGGACAGAGAGTGGGAGTTTCATACTATGATTCTAGCATCCGCCAGCTTCATGTGCTGGAAGTTTGGGAGGATGGCAGCATGGAATACCCTCT
CATTGATCTAGTGAAGTATCAAGCTAAGCCCCTAATGATATATACTAGCACTAAAAGTGAGGAGTCTTTCTTGGCTGCTTTGGAACGGAGTGACGTTATGTCTGAGGCTC
CTACAGTGAAGCTTGTGAAGAGTTCAATTTTCAGCTATGAACAGGCCTGGCACAGACTGGTCTACCTACGAGTAACAGGAATGGATGATGGATTAAACATCAAGGAGAGA
ATTTGTTATGTAAGTCGATAA

mRNA sequence

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ATGCCCCTGGCTTGTAAGACAGATATACATGGCTTGTGTCAAACATGGACAGAGAGTGGGAGTTTCATACTATGATTCTAGCATCCGCCAGCTTCATGTGCTGGAAGTTT
GGGAGGATGGCAGCATGGAATACCCTCTCATTGATCTAGTGAAGTATCAAGCTAAGCCCCTAATGATATATACTAGCACTAAAAGTGAGGAGTCTTTCTTGGCTGCTTTG
GAACGGAGTGACGTTATGTCTGAGGCTCCTACAGTGAAGCTTGTGAAGAGTTCAATTTTCAGCTATGAACAGGCCTGGCACAGACTGGTCTACCTACGAGTAACAGGAAT
GGATGATGGATTAAACATCAAGGAGAGAATTTGTTATGTAAGTCGATAACTGATACATATTTTTCAGACTTCTATCGCTTCTTTTATGTTTATGGCTACTGTTGATGTAG
AAGTTCAATTATATATTGTAAAGAAGAGGTAGAGACTACTGAGCTGGTGGTGCTATCCTAGTTTCCGAACTGGTTCAATATGTGATTCTGTGAACATATTAACTTTGTAA
ACTGGTTATTGAATGAACAAGAAA

Protein sequence

Show/hide protein sequence

MACVKHGQRVGVSYYDSSIRQLHVLEVWEDGSMEYPLIDLVKYQAKPLMIYTSTKSEESFLAALERSDVMSEAPTVKLVKSSIFSYEQAWHRLVYLRVTGMDDGLNIKER
ICYVSR

CcUC10G190600 (gene) of Watermelon (PI 537277) v1 genome