CuGenDBv2

Gene ID	CcUC10G190780
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	CicolChr10:5913407..5918367
RNA-Seq Expression	CcUC10G190780
Synteny	CcUC10G190780
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

5.9e-63

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
        YGLEFLSEDDGK+EL+KF    M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

1.7e-62

87.33

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
        YGLEFLSEDDGK+EL+KF   +M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

XP_030954732.1 uncharacterized protein LOC115977176 [Quercus lobata]

1.2e-63

85.23

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYYQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
        YGLEFLSEDDGK ELSKF+  S+ D+DD DEDDDDDDD+EY+V+QEEKK
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

XP_038903157.1 uncharacterized protein LOC120089825 [Benincasa hispida]

3.1e-64

87.33

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLY+CM+LMKPHVKKEALLDLVARVGKHVFR+NGVVCDI+SFGVVQLGYGIKKLDGRYYQGQLMQMTMMATP+ NKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA
        YGLEFLSEDDGKSEL +F   SM D+ D DEDD+DDDDEEYNVEQE+++A
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

1.4e-64

87.58

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVVCDIKSFGVVQLGYGIKKL+GRYYQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE---DDDDDDDEEYNVEQEEKKA
        YGLEFLSE+DGKSEL KF    M D+ DEDE   DDDD+DDEEYNVEQE+++A
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE---DDDDDDDEEYNVEQEEKKA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLC8 30S ribosomal protein S6

7.7e-61

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYD MLLMKPHVKKEALLDLVARVGKHVFR+NGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA
        YGLEFLSEDD KS   +FS  ++  ++D+D+DDDDDDDEEY+VEQE+ KA
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

A0A2N9FW87 Uncharacterized protein

2.7e-61

82.55

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+R+NGV+ D+KSFG VQLGYGIKKLDGRYYQGQLMQMTMMATPN+N+ELHYLN EDRLLRWLLVKHR+TK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
        YGLEFL+EDDGK ELSKF+  S+ D++D DEDDDDDDDEEY+V+QEE+K
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A6J1CN79 uncharacterized protein LOC111013137

1.8e-62

87.33

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKF-SLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
        YGLEFLSEDD K ELSKF  +  M D+D ++EDDDDD+DEEY+VEQEE K
Subjt:  YGLEFLSEDDGKSELSKF-SLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A6J1FEF6 uncharacterized protein LOC111443208

2.8e-63

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
        YGLEFLSEDDGK+EL+KF    M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

A0A7N2L1D1 Uncharacterized protein

5.7e-64

85.23

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYYQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
        YGLEFLSEDDGK ELSKF+  S+ D+DD DEDDDDDDD+EY+V+QEEKK
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.9e-43

64.44

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD
         G     ++D  +  ++ +  S+ D    DEDD++
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

8.2e-39

60.74

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTK

Query:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD
         G     ++D  +  ++ +  S+ D    DEDD++
Subjt:  YGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTATTGCGTTGGCTTTTAGTGAAGCATCGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGAT
GGAAAGAGTGAACTCAGCAAATTTTCTTTACGAAGCATGACGGATGAAGACGATGAAGATGAAGACGACGATGACGATGATGATGAAGAATACAACGTGGAACAAGAAGA
GAAGAAAGCATAG

mRNA sequence

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CGCAAAACAGACCATTTTTTCTTAAACCCTATTTCACGTTCAGCCACACCCCCTCCCCGCCGCCGTACGCTGCACTCTAATCTGCCGCATTCTCTCCCTCCCAACGAACT
CGCCGCCTCTCCCTCCCTCTCACACTCTCTCGCCTCTCCGAGCAATCAGAGTTACTTATCTCTGTTGTTTTTTCTTTCTTCAGAAATAGAAACAGTGGTTCAACCCCCGC
CGTTGGTGAGATCGCACCGCCCCTCACGCGTCGTCCGCTCATTTTTCAGCTCCCGAGGAGTTTCAAACAAAGGCAAGTAAAGGAAACGGCGCAGGCTGCCATTTCTCTCA
GCAGTTTGAAATAGTAATTTTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTT
GGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGAT
ATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTATTGCGTTGGCTTTTAGTGAAG
CATCGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTTCTTTACGAAGCATGACGGATGAAGACGATGAAGATGAAGA
CGACGATGACGATGATGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAGTGAATTTCGCTCGTCTCTACGGCCCAACTTTTGAACTTATTGAAGGACCTCT
GGTACCATTTTTGGATTCTAGACAGACAAATAAAGAGGTCCATAGTTTCTTTAGTTGTCCATATCATCTGTTTCTGAGAAACAAAGATCCATAAATGTCTTTTTCTCAAA
CTTCCATTAGAATGGGATGTTTGGGGGATGATTTCCAGGTCTTGGGTTCAGCTCTAAATGAAAAGTTCAAGAAATGAAAATCCTTGTCTGTCTTTTAAAGCTTGGTGTAG
TGTAATCTTGCTTGTATTGACTTTGTATGAAATGAAACTGGAGCAAATATGAGGTTTGTTGAAGATCTGGTTGAGATAATCTAGACAAGTTTGTTTCAAGTGATATTCAG
TGAATATGGTTGTGGTTCTTGAATTTTTCTTTGTTTATTTTCATTTTGAAATAAAAAAGAGGTGGA

Protein sequence

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MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDD
GKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

CcUC10G190780 (gene) of Watermelon (PI 537277) v1 genome