; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G190790 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G190790
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranslation elongation factor EF1B/ribosomal protein S6 family protein
Genome locationCicolChr10:5928030..5933038
RNA-Seq ExpressionCcUC10G190790
SyntenyCcUC10G190790
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000529 - Ribosomal protein S6
IPR014717 - Translation elongation factor EF1B/ribosomal protein S6
IPR035980 - Ribosomal protein S6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1199010.1 hypothetical protein CJ030_MR0G029412 [Morella rubra]9.2e-5665.02Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFL--
        MPLYDCMLL+KPHV KEAL+DLVAR+GKHV+R+NGV+ D+K FG VQLGYGIKKLDGRYYQ F     G + S      +A  S    LG    NLFL  
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFL--

Query:  NCIVKFPDFVL----GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQE
        + +  +  ++L    GQLMQMTMMATPNMN ELHYLNKEDRLLRWLL+KH DTKYGLEFL+EDDGK ELSKF+  S+ DED    +DDDDDDEEY V+QE
Subjt:  NCIVKFPDFVL----GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQE

Query:  EKK
         KK
Subjt:  EKK

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]2.0e-5566.16Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+Q                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
                 GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKH DTKYGLEFLSEDDGK+EL+KF    M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

XP_030954732.1 uncharacterized protein LOC115977176 [Quercus lobata]4.1e-5663.96Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKH DTKYGLEFLSEDDGK ELSKF+  S+ D+DD DEDDDDDDD+EY+V+QEEKK
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

XP_038903157.1 uncharacterized protein LOC120089825 [Benincasa hispida]1.1e-5665.66Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLY+CM+LMKPHVKKEALLDLVARVGKHVFR+NGVVCDI+SFGVVQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA
                 GQLMQMTMMATP+ NKELHYLNKEDRLLRWLLVKH DTKYGLEFLSEDDGKSEL +F   SM D+ D DEDD+DDDDEEYNVEQE+++A
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]4.9e-5766.17Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVVCDIKSFGVVQLGYGIKKL+GRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDE---DDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKH DTKYGLEFLSE+DGKSEL KF    M D+ DEDE   DDDD+DDEEYNVEQE+++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDE---DDDDDDDEEYNVEQEEKK

Query:  A
        A
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A2N9FW87 Uncharacterized protein9.3e-5461.93Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+R+NGV+ D+KSFG VQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+N+ELHYLN EDRLLRWLLVKH +TKYGLEFL+EDDGK ELSKF+  S+ D++D DEDDDDDDDEEY+V+QEE+K
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A6A1UIP2 Uncharacterized protein4.4e-5665.02Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFL--
        MPLYDCMLL+KPHV KEAL+DLVAR+GKHV+R+NGV+ D+K FG VQLGYGIKKLDGRYYQ F     G + S      +A  S    LG    NLFL  
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFL--

Query:  NCIVKFPDFVL----GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQE
        + +  +  ++L    GQLMQMTMMATPNMN ELHYLNKEDRLLRWLL+KH DTKYGLEFL+EDDGK ELSKF+  S+ DED    +DDDDDDEEY V+QE
Subjt:  NCIVKFPDFVL----GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQE

Query:  EKK
         KK
Subjt:  EKK

A0A6J1CN79 uncharacterized protein LOC1110131376.4e-5565.66Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGR+YQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKF-SLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKH DTKYGLEFLSEDD K ELSKF  +  M D+D ++EDDDDD+DEEY+VEQEE K
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKF-SLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

A0A6J1FEF6 uncharacterized protein LOC1114432089.9e-5666.16Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+Q                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK
                 GQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKH DTKYGLEFLSEDDGK+EL+KF    M  +DD DE  DDDDDDDEEY+VEQEE+
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDE--DDDDDDDEEYNVEQEEK

A0A7N2L1D1 Uncharacterized protein2.0e-5663.96Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYYQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK
                 GQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKH DTKYGLEFLSEDDGK ELSKF+  S+ D+DD DEDDDDDDD+EY+V+QEEKK
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein6.6e-3646.99Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+YQ                                       
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD
                 GQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKH D K G     ++D  +  ++ +  S+ D    DEDD++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein2.0e-3244.26Show/hide
Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+Y                                        
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNC

Query:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD
                     Q+TMM TPNMNKELHYLNKED+LLRWLLVKH D K G     ++D  +  ++ +  S+ D    DEDD++
Subjt:  IVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGACCTTTCATTTATACACAGTTGGAACTATTAGAAGTC
GAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAACTTGTTCCTCAACTGTATTGTAAAGTTTCCCGACTTTGTTCTGGGC
CAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTATTGCGTTGGCTTTTAGTGAAGCATAGCGACAC
AAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTTCTTTACGAAGCATGACGGATGAAGACGATGAAGATGAAGACGACGATGACG
ATGATGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAG
mRNA sequenceShow/hide mRNA sequence
ACAACATTCAGCTAAATAAAGAAAAAAATAAAAGAGAGAGAGAAACAAATTTTTATTAAGCTAAAGCAGAAAACCGGCGGAAGGAGAATAACGCAAAACAGACCATTTTT
TCTTAAACCCTATTTCACGTTCAGCCACACCCCCTCCCCGCCGCCGTACGCTGCACTCTAATCTGCCGCATTCTCTCCCTCCCAACGAACTCGCCGCCTCTCCCTCCCTC
TCACACTCTCTCGCCTCTCCGAGCAATCAGAGTTACTTATCTCTGTTGTTTTTTCTTTCTTCAGAAATAGAAACAGTGGTTCAACCCCCGCCGTTGGTGAGATCGCACCG
CCCCTCACGCGTCGTCCGCTCATTTTTCAGCTCCCGAGGAGTTTCAAACAAAGGCAAGTAAAGGAAACGGCGCAGGCTGCCATTTCTCTCAGCAGTTTGAAATAGTAATT
TTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAG
CATGTGTTCAGAAAAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGACCTTTCATTT
ATACACAGTTGGAACTATTAGAAGTCGAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAACTTGTTCCTCAACTGTATTG
TAAAGTTTCCCGACTTTGTTCTGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTATTGCGT
TGGCTTTTAGTGAAGCATAGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTTCTTTACGAAGCATGACGGATGAAGA
CGATGAAGATGAAGACGACGATGACGATGATGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAGTGAATTTCGCTCGTCTCTACGGCCCAACTTTTGAACT
TATTGAAGGACCTCTGGTACCATTTTTGGATTCTAGACAGACAAATAAAGAGGTCCATAGTTTCTTTAGTTGTCCATATCATCTGTTTCTGAGAAACAAAGATCCATAAA
GGTCTTTTTCTCAAACTTCCATTAGAATGGGATGTTTGGGGGATGATTTCCAGGTCTTGGGTTCAGCTCTAAATGAAAAGTTCAAGAAATGAAAATCCTTGTCTGTCTTT
TCAAGCTTGGTGTAGTGTAATCTTGCTTGTATTGACTTTGTATGAAATGAAACTGGAGCAAATATGAGGTTTGTTGAAGATCTGGTTGAGATAATCTAGACAAGTTTGTT
TCAAGTGATATTCAGTGAATATGGTTGTGGTTCTTGAA
Protein sequenceShow/hide protein sequence
MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFHLYTVGTIRSRSPYPNSAVHSVHNILGVLNYNLFLNCIVKFPDFVLG
QLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHSDTKYGLEFLSEDDGKSELSKFSLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA