; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G191260 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G191260
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionANK_REP_REGION domain-containing protein
Genome locationCicolChr10:6519209..6521237
RNA-Seq ExpressionCcUC10G191260
SyntenyCcUC10G191260
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]8.8e-8493.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSR P KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]1.7e-8292.86Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSR P KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]7.7e-8091.67Show/hide
Query:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSR PLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]1.6e-8092.26Show/hide
Query:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSR PLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]2.6e-8394.05Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT S+NLTPRSFNSR P KL S FLGLQS+LRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDR PNEEIKDFILN SVK A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein4.3e-8493.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSR P KLGSHFLGLQS+LRW+SPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DR  NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT8.1e-8392.86Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSR P KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT8.1e-8392.86Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSR P KL SHFLGLQS+LRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDR  NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT3.7e-8091.67Show/hide
Query:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSR PLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT7.5e-8192.26Show/hide
Query:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSR PLKLGS FLGLQS+LRWVSP+AIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDR PN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT2.0e-4659.43Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++ +  +         + L W+ P    A+ P++ S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT2.0e-4659.43Show/hide
Query:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++ +  +         + L W+ P    A+ P++ S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSP---VAIGPSNGS---RATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DR   ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT8.1e-5665.68Show/hide
Query:  SLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S SP  L S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein5.7e-5765.68Show/hide
Query:  SLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S SP  L S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDR  +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCGAGATCCTTCAACTCTCGCTCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCG
ATGGGTTTCACCCGTCGCCATTGGACCCTCTAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAG
ATGACTTCAACAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCAGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCA
GTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGC
CATTGATAGAGTACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
AGTGGATGGATAGAACCTGCAAGAGTGCGATAGCAAAATCACATTTTCTTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATC
TCACCCCGAGATCCTTCAACTCTCGCTCCCCATTGAAATTGGGTTCCCATTTTCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCGCCATTGGACCCTCTAAT
GGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCCGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTT
CAACTACATGGGAATGCTGGCAGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAG
GGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGTACCTAATGAAGAAATTAAGGAT
TTTATTCTTAATTTTTCTGTTAAAAAGGCATGATTTGGTTGGAAATGGCTCTGTTTTGATAGGTTTAGAAAGAGGCTTAAGATTTGTATTCTCACTGCCTTCTGATGTTA
ATCATATTGTATTTGAATTGTACACCTGTTTTCATCCATTTGGGAATGGCTTGGAGATGTAAAATCTTGT
Protein sequenceShow/hide protein sequence
MASLSCTTSINLTPRSFNSRSPLKLGSHFLGLQSSLRWVSPVAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRVPNEEIKDFILNFSVKKA