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CcUC10G191560 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G191560
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCicolChr10:7059360..7062151
RNA-Seq ExpressionCcUC10G191560
SyntenyCcUC10G191560
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-0738.16Show/hide
Query:  RCYPTASTGVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HCEATEQPMGSGLRYGSWLCAAGAVFMVEKG
        R +P     +K ++G M +E W+P+SYEKLPDFCY CG + H +  C+        G R+G WL  +     + KG
Subjt:  RCYPTASTGVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HCEATEQPMGSGLRYGSWLCAAGAVFMVEKG

KAF5462052.1 hypothetical protein F2P56_018092 [Juglans regia]2.3e-0443.94Show/hide
Query:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLH-CEA--------TEQPMGSGLRYGSWLCA
        G  I +G     SW+P  YE+LP FCYYCG++ HT H C          TE P    L+YG WL A
Subjt:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLH-CEA--------TEQPMGSGLRYGSWLCA

PON85093.1 Zinc knuckle CX2CX4HX4C [Trema orientale]3.0e-0436Show/hide
Query:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HC--EATEQPMGSG-LRYGSWLCAAGAVFMVEKGDSRG
        G K+R+GS     WV   YEK+PDFC+YCG + H++ +C  E +E  +  G  +Y  WL  + +  +  K  + G
Subjt:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HC--EATEQPMGSG-LRYGSWLCAAGAVFMVEKGDSRG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.7e-0736.56Show/hide
Query:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLH-CE----ATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWEGANGGRSDLCG
        G+KI I   +   W+PI YE+LPDFCY+CG+I H+ H C+    A +    +   YG WL   G+    +KG         +G +  R D CG
Subjt:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLH-CE----ATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWEGANGGRSDLCG

XP_035546596.1 uncharacterized protein LOC118348645 [Juglans regia]1.7e-0445.16Show/hide
Query:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLHCEATEQPMG-----SGLRYGSWLCA
        G  I +G     SW+P  YEKLP FCYYCG++ HT H  +     G     S L+YG WL A
Subjt:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLHCEATEQPMG-----SGLRYGSWLCA

TrEMBL top hitse value%identityAlignment
A0A1R3FY57 Zinc finger, CCHC-type1.4e-0439.71Show/hide
Query:  EESWVPISYEKLPDFCYYCGLISH-TLHCEATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWE
        E  W  I YE+L DFCY CG + H   +CE  E       +YG+W+C   A    +KG   G W RW+
Subjt:  EESWVPISYEKLPDFCYYCGLISH-TLHCEATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWE

A0A5A7Q953 Cellular nucleic acid-binding protein1.4e-0446.55Show/hide
Query:  VKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HCEATEQPMGSGLRYGSWLCAA
        V +R+ +  +E  + + YE+LPDFCY CG I H L  CEATE      L +GSWL A+
Subjt:  VKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HCEATEQPMGSGLRYGSWLCAA

A0A5D3C0K2 Reverse transcriptase2.4e-0738.16Show/hide
Query:  RCYPTASTGVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HCEATEQPMGSGLRYGSWLCAAGAVFMVEKG
        R +P     +K ++G M +E W+P+SYEKLPDFCY CG + H +  C+        G R+G WL  +     + KG
Subjt:  RCYPTASTGVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTL-HCEATEQPMGSGLRYGSWLCAAGAVFMVEKG

A0A6J1DU55 uncharacterized protein LOC1110231351.8e-0736.56Show/hide
Query:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLH-CE----ATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWEGANGGRSDLCG
        G+KI I   +   W+PI YE+LPDFCY+CG+I H+ H C+    A +    +   YG WL   G+    +KG         +G +  R D CG
Subjt:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLH-CE----ATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWEGANGGRSDLCG

A0A6P9EGW2 uncharacterized protein LOC1183486458.4e-0545.16Show/hide
Query:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLHCEATEQPMG-----SGLRYGSWLCA
        G  I +G     SW+P  YEKLP FCYYCG++ HT H  +     G     S L+YG WL A
Subjt:  GVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLHCEATEQPMG-----SGLRYGSWLCA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAATACTATATTTAGTTGACAACTTAAAAGAAGGAGATGAGAGAGTTCTAGATGAAGATGAAGATGAAGAAGTGAGATTGCCGTTATTGACACAATATGAGATATC
AAAGATCAGCCTTACTAAGGTTGAACCAAATGTGCGCCTTACTTGCATGCATGTGCAGGTGTACAGTACTATGATGGTTCTGATGGATACGATAGAAGGACTAAAAAGAA
AATTACGGGAAATTGTTCCACGGATACCTCGAGTTTACAGCTCGGCACTGAGGGTAGACTGCATGGACGCAAATAAGGATGGGGAAGACTCTATGGGTTCATGTTCGTCT
AGATGTTACCCAACCGCTTCGACGGGGGTAAAGATCAGGATTGGGTCTATGGTTGAAGAATCGTGGGTTCCGATATCGTATGAGAAGTTGCCCGATTTTTGTTACTATTG
TGGTTTAATTAGCCATACGTTGCATTGTGAAGCAACGGAGCAACCAATGGGAAGTGGGTTGAGGTATGGGTCGTGGCTATGTGCAGCAGGGGCGGTCTTCATGGTTGAGA
AAGGGGATTCAAGAGGAGCTTGGGTCAGATGGGAGGGTGCAAATGGAGGGCGATCCGATCTCTGTGGCGGTGGATTTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAATACTATATTTAGTTGACAACTTAAAAGAAGGAGATGAGAGAGTTCTAGATGAAGATGAAGATGAAGAAGTGAGATTGCCGTTATTGACACAATATGAGATATC
AAAGATCAGCCTTACTAAGGTTGAACCAAATGTGCGCCTTACTTGCATGCATGTGCAGGTGTACAGTACTATGATGGTTCTGATGGATACGATAGAAGGACTAAAAAGAA
AATTACGGGAAATTGTTCCACGGATACCTCGAGTTTACAGCTCGGCACTGAGGGTAGACTGCATGGACGCAAATAAGGATGGGGAAGACTCTATGGGTTCATGTTCGTCT
AGATGTTACCCAACCGCTTCGACGGGGGTAAAGATCAGGATTGGGTCTATGGTTGAAGAATCGTGGGTTCCGATATCGTATGAGAAGTTGCCCGATTTTTGTTACTATTG
TGGTTTAATTAGCCATACGTTGCATTGTGAAGCAACGGAGCAACCAATGGGAAGTGGGTTGAGGTATGGGTCGTGGCTATGTGCAGCAGGGGCGGTCTTCATGGTTGAGA
AAGGGGATTCAAGAGGAGCTTGGGTCAGATGGGAGGGTGCAAATGGAGGGCGATCCGATCTCTGTGGCGGTGGATTTGGGTGA
Protein sequenceShow/hide protein sequence
MIILYLVDNLKEGDERVLDEDEDEEVRLPLLTQYEISKISLTKVEPNVRLTCMHVQVYSTMMVLMDTIEGLKRKLREIVPRIPRVYSSALRVDCMDANKDGEDSMGSCSS
RCYPTASTGVKIRIGSMVEESWVPISYEKLPDFCYYCGLISHTLHCEATEQPMGSGLRYGSWLCAAGAVFMVEKGDSRGAWVRWEGANGGRSDLCGGGFG