CuGenDBv2

Gene ID	CcUC10G191590
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	CicolChr10:7362149..7362781
RNA-Seq Expression	CcUC10G191590
Synteny	CcUC10G191590
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.1e-27

37.38

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + + K KGGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

8.1e-28

37.38

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Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + +PK +GGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.1e-27

36.89

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S  CK I+K  R+F W+     H  HL++W+ + +PK +GGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.1e-27

37.38

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + + K KGGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]

4.0e-27

37.38

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Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + + K KGGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein

2.0e-27

37.38

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + + K KGGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein

3.9e-28

37.38

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + +PK +GGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein

1.5e-27

36.89

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S  CK I+K  R+F W+     H  HL++W+ + +PK +GGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

1.5e-27

37.38

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Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + + K KGGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

1.5e-27

37.38

Show/hide

Query:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE
        A+DILLF++D++  +QNL N +  F+    LSINL KS +S ++V      +      +   FLP++Y G PLGG           EE + K LA     
Subjt:  ANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGG----------YEEILKKNLA---IE

Query:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW
        +     ++  +   L   P+Y   I+   +S TCK I+K  R+F W+     H  HL++W+ + + K KGGL I++L D +FALL+KWLW++I ED+ LW
Subjt:  ITQTSQEVAHLDKILPHQPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLW

Query:  KRIIIA
        K+II A
Subjt:  KRIIIA

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.7e-07

38.1

Show/hide

Query:  RDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLWKRII
        R F W   A     HL+ WS V +PK +GGL +     ++ AL+SK  W+ + E NSLW  ++
Subjt:  RDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLWKRII

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

TTTGACACACCTTTTTTGGCTAATGATATATTGTTATTTATGGATGACAATGATGATTACCTTCAAAACCTCTTCAATGCTTTAAAAGCTTTTGAAGCTACCTTCAGGCT
TAGCATCAATCTCATTAAATCTATCTTATCTGATATGAGCGTTGTAGTATTCATGTTTAGGAAGTGGCTAATAAATGAGGCATTAATACTCAATTTTCTACCCCTAAGCT
ACCATGGTGCCCCTCTGGGAGGTTACGAAGAAATACTAAAAAAAAACTTAGCAATTGAAATTACTCAGACATCTCAAGAGGTGGCACACTTGGATAAAATCCTCCCTCAT
CAGCCTTCTTACATAACTTATATTTACTTTCAAACCCTATCTCATACTTGCAAATTAATTCAAAAACACCGTAGAGACTTCTTTTGGCAAGGTAATGCTAACAATCATTG
TCCCCATCTGATTCATTGGTCTATGGTAGTGGCTCCAAAATCCAAAGGAGGGCTCAGGATAACCAAATTGATTGATATAGATTTTGCTCTACTAAGCAAATGGCTATGGA
AGTTTATATCGGAAGACAACTCCTTATGGAAAAGAATTATAATTGCC

mRNA sequence

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Protein sequence

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FDTPFLANDILLFMDDNDDYLQNLFNALKAFEATFRLSINLIKSILSDMSVVVFMFRKWLINEALILNFLPLSYHGAPLGGYEEILKKNLAIEITQTSQEVAHLDKILPH
QPSYITYIYFQTLSHTCKLIQKHRRDFFWQGNANNHCPHLIHWSMVVAPKSKGGLRITKLIDIDFALLSKWLWKFISEDNSLWKRIIIA

CcUC10G191590 (gene) of Watermelon (PI 537277) v1 genome