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CcUC10G192260 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G192260
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRING-type domain-containing protein
Genome locationCicolChr10:9140262..9150119
RNA-Seq ExpressionCcUC10G192260
SyntenyCcUC10G192260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2560.18Show/hide
Query:  MPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTT-ATTTTMDPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAI
        M +IVIFG FL I V ++FF LCLYICFQCYN GFPE +   + +GE+ TTTT AT+  +D  E NR  Q+AMEKLTKPS EYDYE+++E+ S LS+CAI
Subjt:  MPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTT-ATTTTMDPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAI

Query:  CLEEFQERVSCRL
        CLEEF+    CR+
Subjt:  CLEEFQERVSCRL

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1953.91Show/hide
Query:  MPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTTAT-TTTMDPEERNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSEC
        MP+IV+FGF LT+ V  SFF LC+YICFQC+ QGF    Q    NG    T  AT   T++PEE N QT   MEKLT P  +Y  +END   + S L+EC
Subjt:  MPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTTAT-TTTMDPEERNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSEC

Query:  AICLEEFQERVSCRL
        AICLE F  RVSCR+
Subjt:  AICLEEFQERVSCRL

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-1953.91Show/hide
Query:  MPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTTAT-TTTMDPEERNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSEC
        MP+IV+FGF LT+ V  SFF LC+YICFQC+ QGF    Q    NG    T  AT   T++PEE N QT   MEKLT P  +Y  +END   + S L+EC
Subjt:  MPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTTAT-TTTMDPEERNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSEC

Query:  AICLEEFQERVSCRL
        AICLE F  RVSCR+
Subjt:  AICLEEFQERVSCRL

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]9.6e-2070.93Show/hide
Query:  CYN-QGFPEGEQRGSGNGETATTTTATTTTM--DPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAICLEEFQERVSCRL
        C N  GF E EQRG+ N E   TTT   TTM  DPEERNRQ QMAMEKLTKPSA Y+ EENDESPSTLSEC ICLE+  ERVSCR+
Subjt:  CYN-QGFPEGEQRGSGNGETATTTTATTTTM--DPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAICLEEFQERVSCRL

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]3.0e-0548.78Show/hide
Query:  GFPEGEQRGSGNGETATTTTAT-TTTMDPEERNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSECAICLEEFQERVSCRL
        GF    Q    NG    T  AT   T++PEE N Q   AMEKLT P  +Y  +END   + S L+ECAICLE F  RVSCR+
Subjt:  GFPEGEQRGSGNGETATTTTAT-TTTMDPEERNRQTQMAMEKLTKPSAEYDYEEND--ESPSTLSECAICLEEFQERVSCRL

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein1.2e-1277.78Show/hide
Query:  MDPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAICLEEFQERVSCRL
        + P ERNRQ QMAMEKLTKPSA Y+ EENDESPSTLSEC ICLE+  ERVSCR+
Subjt:  MDPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAICLEEFQERVSCRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTAGTTCCGAGAGATGATGAAGGGAATTTGACGGCTATCCTACTGAAATTGTGGACTGATACAACCATGTTGACATGTATGAGCTATGATAATACGCCGCTGAT
GGTTCAGAACATGTCAACGCCTATGAAGTCGTCCACCGTCGCTGCCCGGGTCAACCACCTTGCCGCCACTGCTATTTACCGTTCAACCCAGTCACCATTGATGAGATCTA
TGACTGCCGGCCCTCATATAATTGCTGGTTCTTCTTCACAAGAGATGAGGCTTCATGGTTCTTCCTCACAGGTTGTGGGTAATCATAATTCCCCCCTCCACTCGAACTTT
TTCCCTTCAAATCTCATGCCCGTAATCGTCATCTTTGGCTTTTTCTTGACAATTTTTGTATTCATCTCTTTCTTCGGCTTGTGCCTCTACATCTGTTTCCAATGTTACAA
CCAGGGGTTCCCAGAAGGCGAGCAACGTGGTAGTGGGAATGGAGAAACAGCAACGACAACAACAGCAACAACGACGACAATGGATCCTGAGGAGCGGAATCGTCAGACTC
AAATGGCTATGGAGAAATTGACAAAACCATCAGCAGAGTATGATTACGAGGAAAATGATGAATCTCCATCAACGTTGAGTGAATGTGCAATTTGTTTGGAGGAATTTCAA
GAAAGGGTCTCGTGTCGATTAAATAAAGCTCAGCTAGTTAAATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTAGTTCCGAGAGATGATGAAGGGAATTTGACGGCTATCCTACTGAAATTGTGGACTGATACAACCATGTTGACATGTATGAGCTATGATAATACGCCGCTGAT
GGTTCAGAACATGTCAACGCCTATGAAGTCGTCCACCGTCGCTGCCCGGGTCAACCACCTTGCCGCCACTGCTATTTACCGTTCAACCCAGTCACCATTGATGAGATCTA
TGACTGCCGGCCCTCATATAATTGCTGGTTCTTCTTCACAAGAGATGAGGCTTCATGGTTCTTCCTCACAGGTTGTGGGTAATCATAATTCCCCCCTCCACTCGAACTTT
TTCCCTTCAAATCTCATGCCCGTAATCGTCATCTTTGGCTTTTTCTTGACAATTTTTGTATTCATCTCTTTCTTCGGCTTGTGCCTCTACATCTGTTTCCAATGTTACAA
CCAGGGGTTCCCAGAAGGCGAGCAACGTGGTAGTGGGAATGGAGAAACAGCAACGACAACAACAGCAACAACGACGACAATGGATCCTGAGGAGCGGAATCGTCAGACTC
AAATGGCTATGGAGAAATTGACAAAACCATCAGCAGAGTATGATTACGAGGAAAATGATGAATCTCCATCAACGTTGAGTGAATGTGCAATTTGTTTGGAGGAATTTCAA
GAAAGGGTCTCGTGTCGATTAAATAAAGCTCAGCTAGTTAAATTATGA
Protein sequenceShow/hide protein sequence
MGVVPRDDEGNLTAILLKLWTDTTMLTCMSYDNTPLMVQNMSTPMKSSTVAARVNHLAATAIYRSTQSPLMRSMTAGPHIIAGSSSQEMRLHGSSSQVVGNHNSPLHSNF
FPSNLMPVIVIFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNGETATTTTATTTTMDPEERNRQTQMAMEKLTKPSAEYDYEENDESPSTLSECAICLEEFQ
ERVSCRLNKAQLVKL