CuGenDBv2

Gene ID	CcUC10G192870
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	(R)-mandelonitrile lyase
Genome location	CicolChr10:10549338..10577781
RNA-Seq Expression	CcUC10G192870
Synteny	CcUC10G192870
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors (molecular function) GO:0046593 - mandelonitrile lyase activity (molecular function) GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8541557.1 hypothetical protein F0562_022709 [Nyssa sinensis]

2.0e-17

86.44

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Query:  AGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        +GAYLEA  NVIPF SPARSVFIRNP+SPLYLTVATLMEKITGPLSAGSLRL STDV +
Subjt:  AGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

KAF4349905.1 hypothetical protein G4B88_002327 [Cannabis sativa]

6.1e-19

89.06

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        ITNS  GAYLEA  NVIPF SPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRL STDVR+
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

KAF4392710.1 hypothetical protein G4B88_029449 [Cannabis sativa]

6.1e-19

89.06

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        ITNS  GAYLEA  NVIPF SPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRL STDVR+
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

THG00223.1 hypothetical protein TEA_020656 [Camellia sinensis var. sinensis]

9.7e-17

79.69

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        ITNS  GAYLEA  N++PF SPARSVFI NP+SPL+LTVAT+MEKITGPLS GSLRL STDVRL
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

WP_206438309.1 hypothetical protein [Candidatus Frankia datiscae]

2.0e-22

70.97

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL-PLSGEEEVKYEGDESDVLTTKRNLSKCL
        ITNSGAGAYLEAT NVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRL STDVR+ P++        GD    +   R +   L
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL-PLSGEEEVKYEGDESDVLTTKRNLSKCL

TrEMBL top hits

e value

%identity

Alignment

A0A4S4DCA1 GMC_OxRdtase_N domain-containing protein

4.7e-17

79.69

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        ITNS  GAYLEA  N++PF SPARSVFI NP+SPL+LTVAT+MEKITGPLS GSLRL STDVRL
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

A0A5J5BIC5 GMC_OxRdtase_N domain-containing protein

9.5e-18

86.44

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Query:  AGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        +GAYLEA  NVIPF SPARSVFIRNP+SPLYLTVATLMEKITGPLSAGSLRL STDV +
Subjt:  AGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

A0A6J1BFV6 (R)-mandelonitrile lyase-like

2.3e-16

81.36

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Query:  AGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        AGAY+EA  NVIPF SPARSVFIR P+SPL+LTVAT+MEKI GPLS+GSLRL STDVRL
Subjt:  AGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

A0A7J6DUX9 (R)-mandelonitrile lyase

3.0e-19

89.06

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        ITNS  GAYLEA  NVIPF SPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRL STDVR+
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

A0A7J6HEB8 (R)-mandelonitrile lyase

3.0e-19

89.06

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Query:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        ITNS  GAYLEA  NVIPF SPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRL STDVR+
Subjt:  ITNSGAGAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

SwissProt top hits

e value

%identity

Alignment

Q9SSM2 (R)-mandelonitrile lyase-like

9.5e-15

70.69

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Query:  GAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        GA+LEA  NVIPF SP  SVFIR PASPLY+ V T+MEKI GP+S G LRL STDVR+
Subjt:  GAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

Arabidopsis top hits

e value

%identity

Alignment

AT1G73050.1 Glucose-methanol-choline (GMC) oxidoreductase family protein

6.7e-16

70.69

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Query:  GAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL
        GA+LEA  NVIPF SP  SVFIR PASPLY+ V T+MEKI GP+S G LRL STDVR+
Subjt:  GAYLEATFNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRL

Sequences

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CDS sequence

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ATGAATCAATACCCAATCAGGGAGAGCACCAAGCCAAGTAGTACAAAAGGCATCTCTAAACCCACCCCAGTCAATACCACACGTGAGCAACTGGCCAACCCTCTCTCTCT
CAACCACGCTGACCACCGCCTGGGTAACTCGCGTCGCCACCTCCGCTCACCCTTGCCGTTGACCCAACCCGCCAGCCAATCACCGCCACAACCCACGTCTGTGTGCCGCC
ACCTACAGGTGAAGCTAAGGAGTTTCAGATCGTCGTCGTTCGCCAAGAAGAATATCGGGCTCTTCAAGAACATAACCAATTCAGGGGCGGGGGCTTACCTTGAAGCAACT
TTCAATGTCATACCTTTTGTCTCCCCTGCTCGCTCTGTTTTCATTCGGAACCCAGCTTCACCACTGTATCTCACTGTGGCCACCTTGATGGAGAAGATTACTGGGCCACT
CTCCGCAGGTTCACTTCGGTTGCCATCTACGGATGTCAGGTTGCCCCTCTCAGGGGAAGAGGAAGTTAAGTACGAGGGTGATGAAAGTGATGTGTTGACCACGAAGAGAA
ACTTATCGAAATGCTTAGTTACCAAAGTTTTTACCACCAAGAGAACGAACACTGAAGCATTTCGTTGCTTAATGAAATCTGTTTGGAGAGTTCATGATGACACGAGAATT
GAGCCGGTTGGAGACAATCTTTTCACAATTTAG

mRNA sequence

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Protein sequence

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MNQYPIRESTKPSSTKGISKPTPVNTTREQLANPLSLNHADHRLGNSRRHLRSPLPLTQPASQSPPQPTSVCRHLQVKLRSFRSSSFAKKNIGLFKNITNSGAGAYLEAT
FNVIPFVSPARSVFIRNPASPLYLTVATLMEKITGPLSAGSLRLPSTDVRLPLSGEEEVKYEGDESDVLTTKRNLSKCLVTKVFTTKRTNTEAFRCLMKSVWRVHDDTRI
EPVGDNLFTI

CcUC10G192870 (gene) of Watermelon (PI 537277) v1 genome