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CcUC10G192940 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G192940
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCicolChr10:10751683..10755399
RNA-Seq ExpressionCcUC10G192940
SyntenyCcUC10G192940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046770.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-1056Show/hide
Query:  DTLNGCHSSNDSSRTCRKMKLRALFGEDQFDGSARERLGRNYIHSSSGLNESEEAVEHEDEDTAGGDAEDEIADV
        D++      N  + T  +++    FGE+QFDG+A +RLGRNYIH  S LNESEEAVEHE ED+ GGD ED+IADV
Subjt:  DTLNGCHSSNDSSRTCRKMKLRALFGEDQFDGSARERLGRNYIHSSSGLNESEEAVEHEDEDTAGGDAEDEIADV
TrEMBL top hitse value%identityAlignment
A0A5A7TUF9 Ty3-gypsy retrotransposon protein1.0e-1056Show/hide
Query:  DTLNGCHSSNDSSRTCRKMKLRALFGEDQFDGSARERLGRNYIHSSSGLNESEEAVEHEDEDTAGGDAEDEIADV
        D++      N  + T  +++    FGE+QFDG+A +RLGRNYIH  S LNESEEAVEHE ED+ GGD ED+IADV
Subjt:  DTLNGCHSSNDSSRTCRKMKLRALFGEDQFDGSARERLGRNYIHSSSGLNESEEAVEHEDEDTAGGDAEDEIADV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTAACACCACAAAGCAACTACAAGGCCTCCAAAGAGAACAACACTTGCAACCATGCAAACCACAAAGAGAAGCCCTTTGTACCACCACTTTATGATGTTAAAAG
GGTTAATGTAAAAGGAATCCATGAAGCCCACAGTGAAATTACACCACAACTGAAAAAGAAGGACTCGTTAATTCGTTATCGACCTGGGAGTCGGAGAGAAAAAGAGAGAA
AAGCAGTAGCACTCACATCAAGTGATATGGAGATTCATGGCCGTAGGGTCCCTCAACAGAGACCGTCATTACTGGGCGATGCTTATCAGAAGAAATCTATCTTCCCCCGT
AGTCTCTCCGTCCATTTCCCAAGCACTTTTATCAGAATCGCCAATCGATCTTCCCCTTCCAATGGACTCGACGACACACTGAACGGATGCCATTCCAGCAACGACAGCTC
TCGAACTTGCAGAAAGATGAAGCTCAGAGCATTGTTTGGAGAGGACCAATTCGACGGTTCCGCACGGGAGCGCCTTGGCAGAAATTACATCCACAGTTCTTCTGGATTGA
ACGAATCGGAGGAAGCGGTCGAGCATGAAGATGAAGATACCGCCGGCGGCGATGCTGAAGACGAAATCGCCGACGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATTAACACCACAAAGCAACTACAAGGCCTCCAAAGAGAACAACACTTGCAACCATGCAAACCACAAAGAGAAGCCCTTTGTACCACCACTTTATGATGTTAAAAG
GGTTAATGTAAAAGGAATCCATGAAGCCCACAGTGAAATTACACCACAACTGAAAAAGAAGGACTCGTTAATTCGTTATCGACCTGGGAGTCGGAGAGAAAAAGAGAGAA
AAGCAGTAGCACTCACATCAAGTGATATGGAGATTCATGGCCGTAGGGTCCCTCAACAGAGACCGTCATTACTGGGCGATGCTTATCAGAAGAAATCTATCTTCCCCCGT
AGTCTCTCCGTCCATTTCCCAAGCACTTTTATCAGAATCGCCAATCGATCTTCCCCTTCCAATGGACTCGACGACACACTGAACGGATGCCATTCCAGCAACGACAGCTC
TCGAACTTGCAGAAAGATGAAGCTCAGAGCATTGTTTGGAGAGGACCAATTCGACGGTTCCGCACGGGAGCGCCTTGGCAGAAATTACATCCACAGTTCTTCTGGATTGA
ACGAATCGGAGGAAGCGGTCGAGCATGAAGATGAAGATACCGCCGGCGGCGATGCTGAAGACGAAATCGCCGACGTGTAG
Protein sequenceShow/hide protein sequence
MSLTPQSNYKASKENNTCNHANHKEKPFVPPLYDVKRVNVKGIHEAHSEITPQLKKKDSLIRYRPGSRREKERKAVALTSSDMEIHGRRVPQQRPSLLGDAYQKKSIFPR
SLSVHFPSTFIRIANRSSPSNGLDDTLNGCHSSNDSSRTCRKMKLRALFGEDQFDGSARERLGRNYIHSSSGLNESEEAVEHEDEDTAGGDAEDEIADV