CuGenDBv2

Gene ID	CcUC10G193330
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Genome location	CicolChr10:11962745..12103582
RNA-Seq Expression	CcUC10G193330
Synteny	CcUC10G193330
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0009536 - plastid (cellular component) GO:0008236 - serine-type peptidase activity (molecular function)
InterPro domains	IPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060718.1 ATP-dependent Clp protease proteolytic subunit 3 [Cucumis melo var. makuwa]

1.7e-24

58.68

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA+AT PPKT+VWDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        +KIL+NG +GG+GSDEERGSQ
Subjt:  NKILQNGDRGGQGSDEERGSQ

XP_008457103.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]

1.7e-24

58.68

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA+AT PPKT+VWDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        +KIL+NG +GG+GSDEERGSQ
Subjt:  NKILQNGDRGGQGSDEERGSQ

XP_011651427.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus]

7.2e-23

56.56

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA+AT PPKT++WDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNG-DRGGQGSDEERGSQ
        +KIL+NG + GGQGSD+ERG Q
Subjt:  NKILQNG-DRGGQGSDEERGSQ

XP_022143418.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica charantia]

5.0e-24

57.85

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA A  PPKT+VWDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        +KILQNG +GGQG+DEERG+Q
Subjt:  NKILQNGDRGGQGSDEERGSQ

XP_038902354.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Benincasa hispida]

1.9e-23

57.85

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREM YHKIKLNK +                  N++             ++  G+PGLIAP A+AT PPKT+VWDLWKVEGSRK KKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        NKILQNG + GQGSDEERGSQ
Subjt:  NKILQNGDRGGQGSDEERGSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LA84 ATP-dependent Clp protease proteolytic subunit

3.5e-23

56.56

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA+AT PPKT++WDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNG-DRGGQGSDEERGSQ
        +KIL+NG + GGQGSD+ERG Q
Subjt:  NKILQNG-DRGGQGSDEERGSQ

A0A1S3C615 ATP-dependent Clp protease proteolytic subunit

8.3e-25

58.68

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA+AT PPKT+VWDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        +KIL+NG +GG+GSDEERGSQ
Subjt:  NKILQNGDRGGQGSDEERGSQ

A0A1U8A5A6 ATP-dependent Clp protease proteolytic subunit

2.3e-22

50.38

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Query:  KATEMSIWIREMAYHKIKLNKF-----------------------------YYFNYLLLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEM + IREM YHKIKLNK                              Y     ++  G+PGLIAPIA ++ PPKT+VWDLWK+EGSRKA+KN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKF-----------------------------YYFNYLLLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQFLKIQESKHSPS
        NKILQNG  GGQG+DEERG+     ++ K SP+
Subjt:  NKILQNGDRGGQGSDEERGSQFLKIQESKHSPS

A0A5A7UZN2 ATP-dependent Clp protease proteolytic subunit

8.3e-25

58.68

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA+AT PPKT+VWDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        +KIL+NG +GG+GSDEERGSQ
Subjt:  NKILQNGDRGGQGSDEERGSQ

A0A6J1CQN6 ATP-dependent Clp protease proteolytic subunit

2.4e-24

57.85

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREMAYHKIKLNK +                  N++             ++  G+PGLIAPIA A  PPKT+VWDLWKVEGSRKAKKN PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNGDRGGQGSDEERGSQ
        +KILQNG +GGQG+DEERG+Q
Subjt:  NKILQNGDRGGQGSDEERGSQ

SwissProt top hits

e value

%identity

Alignment

Q9SXJ6 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic

4.0e-16

47.66

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Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREM YHKIKLNK +                  N+L             ++  G+PGLIAPI   T PPKT+VWDLWKVEG++K   N PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNG
          + QNG
Subjt:  NKILQNG

Arabidopsis top hits

e value

%identity

Alignment

AT1G66670.1 CLP protease proteolytic subunit 3

2.8e-17

47.66

Show/hide

Query:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE
        KATEMSI IREM YHKIKLNK +                  N+L             ++  G+PGLIAPI   T PPKT+VWDLWKVEG++K   N PSE
Subjt:  KATEMSIWIREMAYHKIKLNKFY----------------YFNYL-------------LLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSE

Query:  NKILQNG
          + QNG
Subjt:  NKILQNG

Sequences

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CDS sequence

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ATGATACTGGAGGAGTCTAAGCTGCAGCACCATATCTTTGAGACTATCGAGGCACCTAGTCCTAAGACTGATAAATTTTACTTCTTATGTGAAGTTGTTGGATTGAAAGG
ATGCTCTCTTATAATCTATATTGCTTCCCACAGTATTCATTCCCTTCATTCTTTTAGTTTTGGCCTGAAGCGAGCTCCTTGTTGCTCCAAACTGCTTGTGTTTGAGAGTG
TAAAACAAGTGAGTTCAAGTGCCTTCTGTGTTGATCAAAGTGCAGAGAATAGAACAAAAGCAACGGAGATGAGCATATGGATACGAGAAATGGCGTATCACAAGATTAAG
CTAAACAAATTTTATTACTTTAACTACCTGTTATTGACGATGGGAAGGCCGGGACTTATTGCTCCAATTGCAAAAGCAACTCTTCCACCGAAAACCCAAGTCTGGGATCT
ATGGAAGGTTGAAGGGAGTCGGAAAGCCAAGAAGAATTGGCCTTCAGAAAACAAGATTTTGCAGAATGGAGATCGAGGTGGTCAAGGAAGTGACGAGGAGCGCGGTAGCC
AGTTTTTGAAAATTCAAGAGTCCAAACATTCCCCTTCTCTCCCCTTGTCTAGATGCTCAAATATTGCTACAGTCAATATTGAATCTGTCTCCAAACCTTCGCTCAATCTG
CAATTTTATGATCTTAGTAAGTTACTGCAACTTGAAGGGAAGTTTCTTTCAGTTTTGTAG

mRNA sequence

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Protein sequence

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MILEESKLQHHIFETIEAPSPKTDKFYFLCEVVGLKGCSLIIYIASHSIHSLHSFSFGLKRAPCCSKLLVFESVKQVSSSAFCVDQSAENRTKATEMSIWIREMAYHKIK
LNKFYYFNYLLLTMGRPGLIAPIAKATLPPKTQVWDLWKVEGSRKAKKNWPSENKILQNGDRGGQGSDEERGSQFLKIQESKHSPSLPLSRCSNIATVNIESVSKPSLNL
QFYDLSKLLQLEGKFLSVL

CcUC10G193330 (gene) of Watermelon (PI 537277) v1 genome