; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G193420 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G193420
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionATP synthase subunit alpha
Genome locationCicolChr10:12363262..12365853
RNA-Seq ExpressionCcUC10G193420
SyntenyCcUC10G193420
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR036188 - FAD/NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAQ74515.1 F1-ATPase alpha subunit, partial [Commelina communis]1.1e-0546.15Show/hide
Query:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV
        G +V R F ++ + A R + G +  A+                      PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV

AAQ74569.1 F1-ATPase alpha subunit, partial [Murdannia sp. BH 75-650]8.3e-0646.15Show/hide
Query:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV
        G +V R F ++ + A R + G +  A+                      PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV

ASC48307.1 ATPase subunit 1, partial [Echinodorus berteroi]5.4e-0589.66Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDG+G+LSDHERRRVEVKAPGIIEC+SV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

KAF6982731.1 hypothetical protein CFC21_001079 [Triticum aestivum]1.1e-0596.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDG+GALSDHERRRVEVKAPGIIECKSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

VFQ65148.1 unnamed protein product [Cuscuta campestris]4.9e-06100Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIECKSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

TrEMBL top hitse value%identityAlignment
A0A1Z3FRC3 ATPase subunit 1 (Fragment)2.6e-0589.66Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDG+G+LSDHERRRVEVKAPGIIEC+SV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

A0A3B6C5R9 ATP synthase subunit alpha5.3e-0696.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDG+GALSDHERRRVEVKAPGIIECKSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

A0A484KJY1 Uncharacterized protein2.4e-06100Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIECKSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

Q5VKZ8 ATP synthase subunit alpha (Fragment)4.0e-0646.15Show/hide
Query:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV
        G +V R F ++ + A R + G +  A+                      PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV

Q5VL52 ATP synthase subunit alpha (Fragment)5.3e-0646.15Show/hide
Query:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV
        G +V R F ++ + A R + G +  A+                      PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  GKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV

SwissProt top hitse value%identityAlignment
P05493 ATP synthase subunit alpha, mitochondrial1.6e-0796.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

P05495 ATP synthase subunit alpha, mitochondrial1.6e-0796.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

P18260 ATP synthase subunit alpha, mitochondrial1.6e-0796.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

P24459 ATP synthase subunit alpha, mitochondrial1.6e-0796.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

Q06735 ATP synthase subunit alpha, mitochondrial1.6e-0796.55Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDGRGALSDHERRRVEVKAPGIIE KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

Arabidopsis top hitse value%identityAlignment
AT1G72970.1 Glucose-methanol-choline (GMC) oxidoreductase family protein1.2e-0529.73Show/hide
Query:  ERLINLLRDSSSLITTGKVSPICEIQEQLASGINGISWRKKKNIRKRDLNPVLSLALELVDRDLEYYMALPWWMP---LVGKVVDRNFRVIGIDAFRVID
        +R +  +R  S ++T+ +     +  +Q    +  +S +   N+R + LN   S+A    D      +   W      LVGKVV  N +V+G+D  RVID
Subjt:  ERLINLLRDSSSLITTGKVSPICEIQEQLASGINGISWRKKKNIRKRDLNPVLSLALELVDRDLEYYMALPWWMP---LVGKVVDRNFRVIGIDAFRVID

Query:  GSIFTAINGTS
        GS F    GT+
Subjt:  GSIFTAINGTS

AT2G07698.1 ATPase, F1 complex, alpha subunit protein1.2e-0786.21Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDG+GALSDHE+RRVEVKAPGI+E KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV

AT3G56060.1 Glucose-methanol-choline (GMC) oxidoreductase family protein3.4e-0534.18Show/hide
Query:  ASGINGISWRKKKNIRKRDLNPVLSLALELVDRDLEYYMALPWWMPLVGKVVDRNFRVIGIDAFRVIDGSIFTAINGTS
        A G+  +      N+R R +     L    +D  +  Y         VGKVVD N++V+G+DA R+IDGS F    GT+
Subjt:  ASGINGISWRKKKNIRKRDLNPVLSLALELVDRDLEYYMALPWWMPLVGKVVDRNFRVIGIDAFRVIDGSIFTAINGTS

AT5G51950.1 Glucose-methanol-choline (GMC) oxidoreductase family protein5.7e-0562.5Show/hide
Query:  VGKVVDRNFRVIGIDAFRVIDGSIFTAINGTS
        VG+VVD+N+RV+GID+ RVIDGS F    GT+
Subjt:  VGKVVDRNFRVIGIDAFRVIDGSIFTAINGTS

ATMG01190.1 ATP synthase subunit 11.2e-0786.21Show/hide
Query:  PIDGRGALSDHERRRVEVKAPGIIECKSV
        PIDG+GALSDHE+RRVEVKAPGI+E KSV
Subjt:  PIDGRGALSDHERRRVEVKAPGIIECKSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAGTTTCATTAGATATCTTACAACTGGAATCCCTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAAGCTCCCGGGGAGATGAGAGAAGAAAACGAGAGGCT
CATAAACCTCCTCAGGGATAGTTCCAGCCTGATAACTACTGGAAAAGTAAGCCCAATATGCGAAATTCAAGAACAATTGGCTTCGGGGATAAACGGGATCTCTTGGCGAA
AGAAGAAGAACATCCGAAAACGGGATTTGAACCCGGTCCTCTCTTTAGCGCTTGAGTTAGTTGATAGAGACCTTGAGTACTATATGGCACTACCATGGTGGATGCCTCTT
GTGGGCAAGGTAGTTGATCGCAATTTCAGGGTTATTGGGATTGATGCTTTCCGAGTTATTGATGGTTCGATATTCACTGCGATCAATGGCACTAGCAGGCTCTTAAGCCC
TCTGTTCTCTAGTCGAAAGCGTAACGGCTCAAAAGATGAACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTA
TTGAATGTAAATCAGTCTGA
mRNA sequenceShow/hide mRNA sequence
ACAGTTTCATTAGATATCTTACAACTGGAATCCCTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAAGCTCCCGGGGAGATGAGAGAAGAAAACGAGAGGCT
CATAAACCTCCTCAGGGATAGTTCCAGCCTGATAACTACTGGAAAAGTAAGCCCAATATGCGAAATTCAAGAACAATTGGCTTCGGGGATAAACGGGATCTCTTGGCGAA
AGAAGAAGAACATCCGAAAACGGGATTTGAACCCGGTCCTCTCTTTAGCGCTTGAGTTAGTTGATAGAGACCTTGAGTACTATATGGCACTACCATGGTGGATGCCTCTT
GTGGGCAAGGTAGTTGATCGCAATTTCAGGGTTATTGGGATTGATGCTTTCCGAGTTATTGATGGTTCGATATTCACTGCGATCAATGGCACTAGCAGGCTCTTAAGCCC
TCTGTTCTCTAGTCGAAAGCGTAACGGCTCAAAAGATGAACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTA
TTGAATGTAAATCAGTCTGA
Protein sequenceShow/hide protein sequence
TVSLDILQLESLFFPIQFLHHREPQAPGEMREENERLINLLRDSSSLITTGKVSPICEIQEQLASGINGISWRKKKNIRKRDLNPVLSLALELVDRDLEYYMALPWWMPL
VGKVVDRNFRVIGIDAFRVIDGSIFTAINGTSRLLSPLFSSRKRNGSKDEPIDGRGALSDHERRRVEVKAPGIIECKSV