CuGenDBv2

Gene ID	CcUC10G193540
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	CicolChr10:13225072..13226075
RNA-Seq Expression	CcUC10G193540
Synteny	CcUC10G193540
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007642 - RNA polymerase Rpb2, domain 2 IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037034 - RNA polymerase Rpb2, domain 2 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM89028.1 RNA polymerase beta subunit [Lagenaria siceraria]

7.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

7.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

AHM90682.1 RNA polymerase beta subunit [Lagenaria siceraria]

7.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

QZL38585.1 RNA polymerase beta subunit [Citrullus naudinianus]

7.8e-67

92.52

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Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

7.8e-67

92.52

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Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LDX8 DNA-directed RNA polymerase subunit beta

3.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

3.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

A0A218KG28 DNA-directed RNA polymerase subunit beta

3.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

3.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

A0A6M3RVI4 DNA-directed RNA polymerase subunit beta

3.8e-67

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

SwissProt top hits

e value

%identity

Alignment

A0ZZ27 DNA-directed RNA polymerase subunit beta

1.2e-67

89.12

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        T+QEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT +DMQEQTIFIGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

Q0G9X0 DNA-directed RNA polymerase subunit beta

1.9e-68

89.12

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSEFY+SAGLIWKT RDMQEQTIF+GNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEID+KARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

Q0ZJ28 DNA-directed RNA polymerase subunit beta

1.5e-68

90.48

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT RDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVI+QILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTI+SDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

Q49L06 DNA-directed RNA polymerase subunit beta

3.3e-68

89.8

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT RDMQEQT+FIGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

Q4VZP1 DNA-directed RNA polymerase subunit beta

1.0e-69

92.52

Show/hide

Query:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
        TDQEIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI
Subjt:  TDQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGI

Query:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD
        SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM ++
Subjt:  SVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMDTD

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

3.1e-66

88.81

Show/hide

Query:  DQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS
        D EIEFQLFV    +VEP +KERDAVYESLTYSSE YVSAGLIWKT R+MQEQ IFIGNIPLMNSLGTSIVNG+YRIVI+QILQSPGIYY+SELDHNGIS
Subjt:  DQEIEFQLFV----VVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGIS

Query:  VYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM
        VYTGTIISDWGGRLELEID+KARIWARVSRKQKISILVLSSAM
Subjt:  VYTGTIISDWGGRLELEIDRKARIWARVSRKQKISILVLSSAM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ACAGATCAAGAAATTGAATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTCTACGTATCCGC
AGGATTAATTTGGAAAACCCGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAATGGACTATACAGAA
TTGTGATCAGTCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCAGAATTGGACCATAACGGAATTTCGGTCTATACCGGCACCATAATATCTGATTGGGGAGGAAGA
TTAGAATTAGAGATTGATCGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAGAAAATATCTATTCTAGTTCTATCATCAGCTATGGATACAGATCAAGAAATTGA
ATTTCAATTATTTGTGGTGGTAGAACCATTTCTAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCTGAATTC

mRNA sequence

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Protein sequence

Show/hide protein sequence

TDQEIEFQLFVVVEPFLKERDAVYESLTYSSEFYVSAGLIWKTRRDMQEQTIFIGNIPLMNSLGTSIVNGLYRIVISQILQSPGIYYRSELDHNGISVYTGTIISDWGGR
LELEIDRKARIWARVSRKQKISILVLSSAMDTDQEIEFQLFVVVEPFLKERDAVYESLTYSSEF

CcUC10G193540 (gene) of Watermelon (PI 537277) v1 genome