; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G193740 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G193740
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description30S ribosomal protein S7, chloroplastic
Genome locationCicolChr10:15558226..15559408
RNA-Seq ExpressionCcUC10G193740
SyntenyCcUC10G193740
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
InterPro domainsIPR000235 - Ribosomal protein S5/S7
IPR023798 - Ribosomal protein S7 domain
IPR036823 - Ribosomal protein S7 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2034696.1 hypothetical protein ES319_D04G103500v1 [Gossypium barbadense]8.3e-0947.25Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  +  + V +  G +++  I +G     A A H           R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

MBA0765675.1 hypothetical protein [Gossypium trilobum]5.6e-1375.81Show/hide
Query:  HIRTSTCHSLVIRGISKTSGS--------ELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        + R STCHSLVIRGI KT GS        +LVDAA GSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  HIRTSTCHSLVIRGISKTSGS--------ELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

THU43687.1 hypothetical protein C4D60_Mb00t12220 [Musa balbisiana]2.9e-0979.25Show/hide
Query:  LVIRGISKTSG--------SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        LV  GI KTSG        SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  LVIRGISKTSG--------SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

VVW87328.1 unnamed protein product, partial [Nymphaea colorata]9.5e-1376.27Show/hide
Query:  RTSTCHSLVIRGISKTSGSE--------LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        + STCHSLVIRGI KTSGS+        +VDAA+GSGDAIRKKEETHRMAEANRAFAHF
Subjt:  RTSTCHSLVIRGISKTSGSE--------LVDAAKGSGDAIRKKEETHRMAEANRAFAHF

XP_021665387.1 uncharacterized protein LOC110653894 [Hevea brasiliensis]6.4e-0957.89Show/hide
Query:  MGRSNRRV-ILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        +GRS ++V I +G     A A           + R +S    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  MGRSNRRV-ILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

TrEMBL top hitse value%identityAlignment
A0A4S8I6Z2 Ribosomal_S7 domain-containing protein1.4e-0979.25Show/hide
Query:  LVIRGISKTSG--------SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        LV  GI KTSG        SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  LVIRGISKTSG--------SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

A0A5D2LBW3 Ribosomal_S7 domain-containing protein4.0e-0947.25Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  +  + V +  G +++  I +G     A A H           R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

A0A5K1HJS0 Ribosomal_S7 domain-containing protein (Fragment)4.6e-1376.27Show/hide
Query:  RTSTCHSLVIRGISKTSGSE--------LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        + STCHSLVIRGI KTSGS+        +VDAA+GSGDAIRKKEETHRMAEANRAFAHF
Subjt:  RTSTCHSLVIRGISKTSGSE--------LVDAAKGSGDAIRKKEETHRMAEANRAFAHF

A0A7J9DZB7 Ribosomal_S7 domain-containing protein2.7e-1375.81Show/hide
Query:  HIRTSTCHSLVIRGISKTSGS--------ELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        + R STCHSLVIRGI KT GS        +LVDAA GSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  HIRTSTCHSLVIRGISKTSGS--------ELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

U3MFY1 Ribosomal protein S74.0e-0947.25Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  N T+   +  G +++  I +G     A A     +       R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

SwissProt top hitse value%identityAlignment
A0A381 30S ribosomal protein S7, chloroplastic7.1e-1146.15Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  + T+   +  G +++  I +G     A A     +       R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

P62729 30S ribosomal protein S7, chloroplastic7.1e-1146.15Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  + T+   +  G +++  I +G     A A     +       R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

Q2MIE1 30S ribosomal protein S7, chloroplastic7.1e-1146.15Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  + T+   +  G +++  I +G     A A     +       R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

Q33BY2 30S ribosomal protein S7, chloroplastic7.1e-1146.15Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  + T+   +  G +++  I +G     A A     +       R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

Q3C1M8 30S ribosomal protein S7, chloroplastic7.1e-1146.15Show/hide
Query:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        A++ +  + T+   +  G +++  I +G     A A     +       R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  ALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

Arabidopsis top hitse value%identityAlignment
ATCG00900.1 Ribosomal protein S7p/S5e family protein8.6e-1283.33Show/hide
Query:  RGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  RGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

ATCG01240.1 ribosomal protein S78.6e-1283.33Show/hide
Query:  RGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
        R ++    SELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Subjt:  RGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGGCGACGAACATGGTTCAAGGGTGTCTATACAAAGCCCTTCTCTTCTTCACTCAAAGAGGCAATGCACTCAAAGATTTGAATGGAAATGCCACGCTCTGCGT
GTCACAAGATATGGGGCGTTCTAATCGAAGGGTCATACTTCTCGGCCCTATTACGGCCAATGCACCAGCCAGTCACATAAGGACAAGCACTTGCCATTCGTTGGTTATTA
GGGGCATCTCGAAAACGTCCGGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGACGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCT
TTTGCACATTTTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGGCGACGAACATGGTTCAAGGGTGTCTATACAAAGCCCTTCTCTTCTTCACTCAAAGAGGCAATGCACTCAAAGATTTGAATGGAAATGCCACGCTCTGCGT
GTCACAAGATATGGGGCGTTCTAATCGAAGGGTCATACTTCTCGGCCCTATTACGGCCAATGCACCAGCCAGTCACATAAGGACAAGCACTTGCCATTCGTTGGTTATTA
GGGGCATCTCGAAAACGTCCGGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGACGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCT
TTTGCACATTTTCGTTAA
Protein sequenceShow/hide protein sequence
MTKATNMVQGCLYKALLFFTQRGNALKDLNGNATLCVSQDMGRSNRRVILLGPITANAPASHIRTSTCHSLVIRGISKTSGSELVDAAKGSGDAIRKKEETHRMAEANRA
FAHFR