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CcUC10G193770 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G193770
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 1
Genome locationCicolChr10:15561270..15570955
RNA-Seq ExpressionCcUC10G193770
SyntenyCcUC10G193770
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022900 - electron transport chain (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031966 - mitochondrial membrane (cellular component)
GO:0070469 - respirasome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4072304.1 unnamed protein product [Lactuca saligna]1.2e-2685.9Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  AY DAARFHFVEVPGRGK
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

CAB4076422.1 unnamed protein product [Lactuca saligna]8.1e-2866.67Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSP
        R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  AY DAARFHFVEVPGRG KG    +P +  +K G    +P
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSP

Query:  ADDRTSVAQCQ
        + D   ++Q +
Subjt:  ADDRTSVAQCQ

CAB4077248.1 unnamed protein product [Lactuca saligna]1.2e-2685.9Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  AY DAARFHFVEVPGRGK
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

KAG4906012.1 hypothetical protein JHK86_057259 [Glycine max]5.8e-2669.61Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT------------------------SAIAVLRDINQGNKCRAYDDAARFHFVEVPGR
        R   SDQG GHKGPGTIQVRRTP VTAMSRNLTHRPKRRANTRT                        SAI VLRDINQGN+CRAYDDAARFHFVEVPGR
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT------------------------SAIAVLRDINQGNKCRAYDDAARFHFVEVPGR

Query:  GK
        GK
Subjt:  GK

KAG6383906.1 hypothetical protein SASPL_156330 [Salvia splendens]3.8e-2582.93Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        R   S QG GHKGPGTIQVRRTP VTAMSRNLTH PKRRANTRT    SAI VLRDINQGNK  AYDDAARFHFVEVPGRGK
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

TrEMBL top hitse value%identityAlignment
A0A6N2KCU0 Uncharacterized protein1.1e-2752.02Show/hide
Query:  QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR----------------GGGDRGRAR--------------TVQRRGGSSDQGSG
        Q +    PHAP VRLPR   GR  +++ W G++           C+R                G    G A                V  R   SDQG G
Subjt:  QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR----------------GGGDRGRAR--------------TVQRRGGSSDQGSG

Query:  HKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        HKGPGTIQVRRTP VTAMSRNLTHRPKRRANTRT     SAI VLR INQGNKCRAYDDAARFHF+EVPGRGK
Subjt:  HKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

A0A6N2LVG4 Uncharacterized protein1.1e-2752.02Show/hide
Query:  QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR----------------GGGDRGRAR--------------TVQRRGGSSDQGSG
        Q +    PHAP VRLPR   GR  +++ W G++           C+R                G    G A                V  R   SDQG G
Subjt:  QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR----------------GGGDRGRAR--------------TVQRRGGSSDQGSG

Query:  HKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        HKGPGTIQVRRTP VTAMSRNLTHRPKRRANTRT     SAI VLR INQGNKCRAYDDAARFHF+EVPGRGK
Subjt:  HKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

A0A6N2N7R9 Uncharacterized protein1.1e-2752.02Show/hide
Query:  QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR----------------GGGDRGRAR--------------TVQRRGGSSDQGSG
        Q +    PHAP VRLPR   GR  +++ W G++           C+R                G    G A                V  R   SDQG G
Subjt:  QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR----------------GGGDRGRAR--------------TVQRRGGSSDQGSG

Query:  HKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        HKGPGTIQVRRTP VTAMSRNLTHRPKRRANTRT     SAI VLR INQGNKCRAYDDAARFHF+EVPGRGK
Subjt:  HKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

A0A6S7L0J1 Uncharacterized protein5.7e-2785.9Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK
        R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  AY DAARFHFVEVPGRGK
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK

A0A6S7L3E4 Uncharacterized protein3.9e-2866.67Show/hide
Query:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSP
        R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  AY DAARFHFVEVPGRG KG    +P +  +K G    +P
Subjt:  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSP

Query:  ADDRTSVAQCQ
        + D   ++Q +
Subjt:  ADDRTSVAQCQ

SwissProt top hitse value%identityAlignment
P08834 NADH-ubiquinone oxidoreductase chain 13.2e-1183.72Show/hide
Query:  FISQKQISPPPHAPPVRLPRNRKGRTGARASWVGVKSCKRGGG
        F S K    PPHAPPVRLPRNRKGRTGARASWVGVKS KRGGG
Subjt:  FISQKQISPPPHAPPVRLPRNRKGRTGARASWVGVKSCKRGGG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTTCATCAGTCAAAAGCAGATATCGCCCCCCCCCCATGCTCCCCCGGTCCGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGT
AAAGAGCTGTAAGCGCGGTGGGGGTGACAGAGGACGTGCTCGTACAGTTCAAAGAAGGGGGGGTTCATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGG
TGCGAAGAACCCCGGGGGTGACTGCAATGAGCAGAAATCTCACTCACCGGCCTAAACGACGAGCAAACACTCGAACATCGGCCATAGCAGTACTCCGGGATATAAACCAG
GGCAACAAATGTCGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGAAAGGGCTGAGCAAACTCATTCCCACATTCGTTAGCCGCAA
AGCAGGAAACGGCAGCGACTCACCGGCGGACGACAGGACTAGTGTCGCACAATGCCAATACCGTACAGAATGCATAGCCCCATTTACTATATGTACCGATGAAAGTGACA
AAGGTCATAAGCCTGACGAAAAAGGGGCAAAGCAAGGGTTGTTGGCAATGCGACATCAATTGGCATATAACAAAGGACCAGTGAAAGCCAATGATAGAGCTTACCAGGAT
CGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACTAGACCTTCAATCCTTGATCATCCCCGACCTCACTCAGCGGATGGGAAGCTTGAAAAAAGCGGATTAGAGCGCCT
TCTTCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTTCATCAGTCAAAAGCAGATATCGCCCCCCCCCCATGCTCCCCCGGTCCGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGT
AAAGAGCTGTAAGCGCGGTGGGGGTGACAGAGGACGTGCTCGTACAGTTCAAAGAAGGGGGGGTTCATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGG
TGCGAAGAACCCCGGGGGTGACTGCAATGAGCAGAAATCTCACTCACCGGCCTAAACGACGAGCAAACACTCGAACATCGGCCATAGCAGTACTCCGGGATATAAACCAG
GGCAACAAATGTCGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGAAAGGGCTGAGCAAACTCATTCCCACATTCGTTAGCCGCAA
AGCAGGAAACGGCAGCGACTCACCGGCGGACGACAGGACTAGTGTCGCACAATGCCAATACCGTACAGAATGCATAGCCCCATTTACTATATGTACCGATGAAAGTGACA
AAGGTCATAAGCCTGACGAAAAAGGGGCAAAGCAAGGGTTGTTGGCAATGCGACATCAATTGGCATATAACAAAGGACCAGTGAAAGCCAATGATAGAGCTTACCAGGAT
CGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACTAGACCTTCAATCCTTGATCATCCCCGACCTCACTCAGCGGATGGGAAGCTTGAAAAAAGCGGATTAGAGCGCCT
TCTTCCGTAA
Protein sequenceShow/hide protein sequence
MLFISQKQISPPPHAPPVRLPRNRKGRTGARASWVGVKSCKRGGGDRGRARTVQRRGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQ
GNKCRAYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSPADDRTSVAQCQYRTECIAPFTICTDESDKGHKPDEKGAKQGLLAMRHQLAYNKGPVKANDRAYQD
RIDPLQSLWEKTRPSILDHPRPHSADGKLEKSGLERLLP