CuGenDBv2

Gene ID	CcUC10G193800
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA polymerase
Genome location	CicolChr10:15607131..15607673
RNA-Seq Expression	CcUC10G193800
Synteny	CcUC10G193800
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006351 - transcription, DNA-templated (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0005739 - mitochondrion (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR004868 - DNA-directed DNA polymerase, family B, mitochondria/virus IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

GFS28696.1 hypothetical protein Acr_00g0003340 [Actinidia rufa]

3.1e-66

77.22

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NRK R+ PT+ITALK   T+LK F+VA TET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+EK  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY+ N KMLFRFRDSLNLLPGKLSSLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

GFS28697.1 hypothetical protein Acr_00g0003350 [Actinidia rufa]

3.1e-66

77.22

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NRK R+ PT+ITALK   T+LK F+VA TET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+EK  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY+ N KMLFRFRDSLNLLPGKLSSLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

KAG6621671.1 hypothetical protein I3842_Q008700 [Carya illinoinensis]

2.9e-64

76.11

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI ARKI NR +R+ PT+ITALK   T+LK FIVA TETLL+DNVH PYAAGLLMVRPG+ I D ++D+YFSEDY+I+LDSFEERSTKVL DLVLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+E+  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY +  KMLFRFRDSLNLLPGKL+SLA N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

QCB20442.1 DNA-polymerase-like [Actinidia chinensis]

8.9e-66

76.11

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NRK R++PT+ITALK S T+LK F+VA TET+L+DNVH PYAAGL+MVRPG+ I D M+DTYFSEDY+I+LDSFEERSTKVL D VLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IV++EK  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY + KKMLFRFRDSLNLLPGKL+SLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

TXG60506.1 hypothetical protein EZV62_015079 [Acer yangbiense]

7.5e-65

75.56

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I +RK R++PT+ITALK   T+LK FIV+  ET+L+DNVH PYAAGLLMVRPGK IND M+DTYFSEDY+I++DSFEERSTKVL DLVLR  
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+EK   TI FHNFSRFDGILLLKHLACHHK+YKLKPL+RNN LYELAVY + KKMLFRFRDSLNLLPGKLS+LA N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

TrEMBL top hits

e value

%identity

Alignment

A0A4D6FU75 DNA polymerase

4.3e-66

76.11

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NRK R++PT+ITALK S T+LK F+VA TET+L+DNVH PYAAGL+MVRPG+ I D M+DTYFSEDY+I+LDSFEERSTKVL D VLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IV++EK  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY + KKMLFRFRDSLNLLPGKL+SLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

A0A5C7HW17 DNA-directed DNA polymerase

3.6e-65

75.56

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I +RK R++PT+ITALK   T+LK FIV+  ET+L+DNVH PYAAGLLMVRPGK IND M+DTYFSEDY+I++DSFEERSTKVL DLVLR  
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+EK   TI FHNFSRFDGILLLKHLACHHK+YKLKPL+RNN LYELAVY + KKMLFRFRDSLNLLPGKLS+LA N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

A0A6J5W251 DNA polymerase

2.4e-64

75.56

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NR +R+ PT+ITALK   T+LK FIVA TETLL+DNVH PYAAGLLMVRPG+ I D ++D+YFSEDY+I+LDSFEERSTKVL DLVLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+E+  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY+   KMLFRFRDSLNLLPGKL+SLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

A0A7J0D761 Multifunctional fusion protein

1.5e-66

77.22

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NRK R+ PT+ITALK   T+LK F+VA TET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+EK  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY+ N KMLFRFRDSLNLLPGKLSSLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

A0A7J0D8S5 Multifunctional fusion protein

1.5e-66

77.22

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS
        + PI AR+I NRK R+ PT+ITALK   T+LK F+VA TET+L+D+VH PYAAGL+MVRPG  IND M+DTYFSEDY+I+LDSFEERSTKVL DLVLR S
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTS

Query:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN
         IVR+EK  LTI FHNFSRFDGILLLKHLACHHK+YKLKPLMRN+ LYELAVY+ N KMLFRFRDSLNLLPGKLSSLA+N
Subjt:  AIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

SwissProt top hits

e value

%identity

Alignment

P10582 DNA polymerase

5.7e-23

34.03

Show/hide

Query:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLL-------VDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLR
        +N +   K+G R  R   +YI   K        F VA  ETLL       VD  H+PYA G +MV   K +N   + T+++ DY+ V   F + S K+L 
Subjt:  MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLL-------VDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLR

Query:  DLVLRTSAIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVY----NNNKKMLFRFRDSLNLLPGKLSSLAQN
        +++ R    V++    + + FHN S+FDGI++L  L   +KN  ++P+MRN+ +Y + +Y    N +K+++  F DS  LL  KL+ LA +
Subjt:  DLVLRTSAIVRKEKEILTIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVY----NNNKKMLFRFRDSLNLLPGKLSSLAQN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATCCAATAAGAGCAAGAAAGATTGGTAATAGAAAGCATCGTAACAATCCTACCTATATCACAGCGCTAAAAGTATCTAGCACTAAGCTGAAATCATTCATTGTTGC
TGTTACCGAAACTCTGCTGGTTGATAACGTTCATATGCCTTATGCTGCAGGTCTCTTGATGGTTCGTCCCGGTAAACCTATCAATGATCAGATGATGGATACCTACTTCA
GTGAGGACTACACAATCGTCCTGGATTCCTTTGAAGAAAGGAGTACTAAGGTTCTTCGTGACTTGGTATTGAGGACATCAGCGATAGTTAGAAAAGAGAAAGAGATTCTC
ACAATTGACTTCCACAACTTCTCGCGATTCGATGGAATTTTATTGCTTAAGCACCTAGCATGTCATCACAAGAACTACAAGCTAAAACCACTGATGAGGAACAATATGCT
TTACGAGTTAGCTGTCTATAATAACAATAAGAAGATGTTATTCCGCTTTAGAGACTCCTTGAATCTCCTCCCTGGCAAACTGAGCTCACTAGCTCAAAATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNPIRARKIGNRKHRNNPTYITALKVSSTKLKSFIVAVTETLLVDNVHMPYAAGLLMVRPGKPINDQMMDTYFSEDYTIVLDSFEERSTKVLRDLVLRTSAIVRKEKEIL
TIDFHNFSRFDGILLLKHLACHHKNYKLKPLMRNNMLYELAVYNNNKKMLFRFRDSLNLLPGKLSSLAQN

CcUC10G193800 (gene) of Watermelon (PI 537277) v1 genome