; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G193900 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G193900
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description60S acidic ribosomal protein P1-like
Genome locationCicolChr10:16013507..16015288
RNA-Seq ExpressionCcUC10G193900
SyntenyCcUC10G193900
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032147 - activation of protein kinase activity (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045366.1 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo var. makuwa]1.7e-4186.32Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+VAAP  SAA A A+EEKK         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

XP_004138012.2 60S acidic ribosomal protein P1 [Cucumis sativus]1.3e-4186.32Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAA V+VAAP  SAAAAPA+EEK+         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

XP_008455614.1 PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo]5.7e-4287.18Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+VAAP  SAAAA A+EEKK         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

XP_038905168.1 60S acidic ribosomal protein P1-like [Benincasa hispida]6.1e-4490.6Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+VAAPAVSAAAAPAVEEKK         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

XP_038905286.1 60S acidic ribosomal protein P1-like [Benincasa hispida]2.1e-4490.6Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAV+AAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+VAAPAVSAAAAPAVEEKK         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0LTV1 Uncharacterized protein6.2e-4286.32Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAA V+VAAP  SAAAAPA+EEK+         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

A0A1S3C0X1 60S acidic ribosomal protein P1-like isoform X12.8e-4287.18Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+VAAP  SAAAA A+EEKK         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

A0A5A7TTB2 60S acidic ribosomal protein P1-like isoform X18.1e-4286.32Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+VAAP  SAA A A+EEKK         
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSAAAAPAVEEKKFPPSLIDMV

Query:  EEPKEESDDDMGFSLFD
        EEPKEESDDDMGFSLFD
Subjt:  EEPKEESDDDMGFSLFD

A0A6J1CGB2 60S acidic ribosomal protein P1-like6.9e-4185Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAP---AVSAAAAPAVEEKKFPPSLI
        MSTSELACAYAA+AL+DDGIAITAEKIAAVVAAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAP   A ++AAAPAVEEKK      
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAP---AVSAAAAPAVEEKKFPPSLI

Query:  DMVEEPKEESDDDMGFSLFD
           EEPKEESDDDMGFSLFD
Subjt:  DMVEEPKEESDDDMGFSLFD

A0A6J1JAB2 60S acidic ribosomal protein P13.4e-4077.94Show/hide
Query:  SELSPGP------TLAMSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSA---
        S+  PGP      TL MS SELACAYAALAL+DDGIAITA+KIAAVVAAAGL VESYWPSLFAKLAEKR+IGDLLLNVGCGGGAAAPVSVAA A  A   
Subjt:  SELSPGP------TLAMSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAVSA---

Query:  AAAPAVEEKKFPPSLIDMVEEPKEESDDDMGFSLFD
        AAAPAVEEKK         EEPKEESDDDMGFSLFD
Subjt:  AAAPAVEEKKFPPSLIDMVEEPKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-26.4e-2861.48Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGC-GGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPS
        MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG  GGG  APVS AAPA    +AAAAPA EEKK    
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGC-GGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPS

Query:  LIDMVEEPKEESDDDMGFSLFD
             +EP EESD D+GF LFD
Subjt:  LIDMVEEPKEESDDDMGFSLFD

P29763 60S acidic ribosomal protein P12.1e-2357.85Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGG----AAAPVSVAAPAVSAAAAPAVEEKKFPPSL
        MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ NVG GGG    AAAP +  APA  A AAP  EEKK     
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGG----AAAPVSVAAPAVSAAAAPAVEEKKFPPSL

Query:  IDMVEEPKEESDDDMGFSLFD
             EP EE  +DMGFSLFD
Subjt:  IDMVEEPKEESDDDMGFSLFD

P52855 60S acidic ribosomal protein P15.6e-3269.75Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPA--VSAAAAPAVEEKKFPPSLID
        M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L+VG GGG AAPV+ AAPA   +AAAAPAVEEKK       
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPA--VSAAAAPAVEEKKFPPSLID

Query:  MVEEPKEESDDDMGFSLFD
          EE KEESDDDMGFSLFD
Subjt:  MVEEPKEESDDDMGFSLFD

Q8LCW9 60S acidic ribosomal protein P1-16.8e-3063.33Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+S+ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    AAAAPA EEKK      
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI

Query:  DMVEEPKEESDDDMGFSLFD
           +EP EESD D+GF LFD
Subjt:  DMVEEPKEESDDDMGFSLFD

Q8LEQ0 60S acidic ribosomal protein P1-31.5e-2961.98Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPSL
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+++ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    +AAAAPA EEKK     
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPSL

Query:  IDMVEEPKEESDDDMGFSLFD
            +EP EESD D+GF LFD
Subjt:  IDMVEEPKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family4.9e-3163.33Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+S+ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    AAAAPA EEKK      
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI

Query:  DMVEEPKEESDDDMGFSLFD
           +EP EESD D+GF LFD
Subjt:  DMVEEPKEESDDDMGFSLFD

AT1G01100.2 60S acidic ribosomal protein family4.9e-3163.33Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+S+ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    AAAAPA EEKK      
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI

Query:  DMVEEPKEESDDDMGFSLFD
           +EP EESD D+GF LFD
Subjt:  DMVEEPKEESDDDMGFSLFD

AT1G01100.4 60S acidic ribosomal protein family4.9e-3163.33Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+S+ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    AAAAPA EEKK      
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV--SAAAAPAVEEKKFPPSLI

Query:  DMVEEPKEESDDDMGFSLFD
           +EP EESD D+GF LFD
Subjt:  DMVEEPKEESDDDMGFSLFD

AT5G47700.1 60S acidic ribosomal protein family1.1e-3061.98Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPSL
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+++ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    +AAAAPA EEKK     
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPSL

Query:  IDMVEEPKEESDDDMGFSLFD
            +EP EESD D+GF LFD
Subjt:  IDMVEEPKEESDDDMGFSLFD

AT5G47700.2 60S acidic ribosomal protein family1.1e-3061.98Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPSL
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+++ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ AAPA    +AAAAPA EEKK     
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAAPAV---SAAAAPAVEEKKFPPSL

Query:  IDMVEEPKEESDDDMGFSLFD
            +EP EESD D+GF LFD
Subjt:  IDMVEEPKEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCATTAAATTGGGAAGTTGGCATACTCAGAATCAAAACTATGCCGATCACCGTACGCGCATTTGCTCCGAATTGTCACCTGGTCCTACGCTAGCCATGTCTAC
CAGTGAACTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGATGACGGAATTGCAATCACTGCGGAAAAGATTGCAGCCGTAGTAGCAGCGGCGGGGCTCAGTGTGGAAT
CTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGATCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTTTCTGTAGCTGCT
CCTGCCGTTAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGTTTCCACCTTCATTGATTGACATGGTAGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATT
CAGCTTATTCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCATTAAATTGGGAAGTTGGCATACTCAGAATCAAAACTATGCCGATCACCGTACGCGCATTTGCTCCGAATTGTCACCTGGTCCTACGCTAGCCATGTCTAC
CAGTGAACTCGCCTGCGCCTACGCCGCCCTGGCTCTTCACGATGACGGAATTGCAATCACTGCGGAAAAGATTGCAGCCGTAGTAGCAGCGGCGGGGCTCAGTGTGGAAT
CTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGATCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTTTCTGTAGCTGCT
CCTGCCGTTAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGTTTCCACCTTCATTGATTGACATGGTAGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATT
CAGCTTATTCGACTAGGAGGCTCTTTAATTTTAGGGGATTGTATTAGGAAACTATTGAGTGGGTAGGCCTAATCTTGATTTTCCGCTATTCATTTGTCTCAAGATTTGTT
TTCTTTTTTTTTTTTACTAGGGAGTTCAGTTTTCTTTTTCCTTCAATGTACGATGGCAAATGCATCTGTTCACACTTTTGTTTGATTTACTTCACATCGCAGTGAGATTA
AACTTCATGAGGGGAAATCTTTTTGGTTAAACCATGGA
Protein sequenceShow/hide protein sequence
MSSIKLGSWHTQNQNYADHRTRICSELSPGPTLAMSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLSVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVAA
PAVSAAAAPAVEEKKFPPSLIDMVEEPKEESDDDMGFSLFD