; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G194050 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G194050
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L29, chloroplastic-like
Genome locationCicolChr10:16889248..16892013
RNA-Seq ExpressionCcUC10G194050
SyntenyCcUC10G194050
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR036049 - Ribosomal protein L29/L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577307.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.9e-7291.67Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M++LSIASPS+++IP+K L STSKSSFNGLQIRFPFSFRVPPK ACTGGRN PVVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022941582.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata]2.3e-7192.26Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPS++S PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRN  VVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_022985118.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]5.9e-7292.26Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPS+++IP+K L STSKSSFNGLQIRFPFSFRVPPK AC GGRN PVVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_023531622.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo]3.8e-7192.26Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPS++S PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRN  VVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

XP_038903244.1 50S ribosomal protein L29, chloroplastic [Benincasa hispida]8.3e-7495.24Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPST+SIP KVL STSKSSFNGLQIRFPFSFRVPPKTACTGGRN  VVMMAKREEELKEIRAK+TEEI EEVVDLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

TrEMBL top hitse value%identityAlignment
A0A6J1C3N4 50S ribosomal protein L29, chloroplastic1.1e-6891.07Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPST+S+PS VL STSKSSF GLQIR PFS RV  KT C G RN  VVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1EMX4 50S ribosomal protein L29, chloroplastic-like7.8e-7090.85Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M++LSIASPS+++IP+K L STSKSSFNGLQIRFPFS RVPPK ACTGGRN PVVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA

A0A6J1FMW5 50S ribosomal protein L29, chloroplastic-like1.1e-7192.26Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPS++S PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRN  VVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1IQR3 50S ribosomal protein L29, chloroplastic-like2.4e-7191.67Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M++LSIASPS++S PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRN  VVMMAKREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

A0A6J1JCM6 50S ribosomal protein L29, chloroplastic-like2.9e-7292.26Show/hide
Query:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MI+LSIASPS+++IP+K L STSKSSFNGLQIRFPFSFRVPPK AC GGRN PVVMMAKREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

SwissProt top hitse value%identityAlignment
P82248 50S ribosomal protein L29, chloroplastic1.3e-3757.4Show/hide
Query:  ISLSIASPSTISIPSKVLYSTSKSSFNGLQ---IRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNE
        +S +  S    S P   L   +KSSF+GL+   +    S R+  +T  +      VV+M K+E+ELKE+R KT E++NEE++ LKGEL MLRLQ+SAR  
Subjt:  ISLSIASPSTISIPSKVLYSTSKSSFNGLQ---IRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNE

Query:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS
        FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+  A  EAEK+
Subjt:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS

Q49ZG0 50S ribosomal protein L291.9e-0448.39Show/hide
Query:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG
        KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE+G
Subjt:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG

Q4L8A6 50S ribosomal protein L295.5e-0449.18Show/hide
Query:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE
        KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIEE
Subjt:  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE

Q9FJP3 50S ribosomal protein L29, chloroplastic3.1e-4767.26Show/hide
Query:  MISLSIASPSTISIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNFP-VVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M+SLSIA+P T +I  +   S  ++ SSF+G++I+   S RVP     +     P VVMM+KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MISLSIASPSTISIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNFP-VVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE

Q9SWI6 50S ribosomal protein L29, chloroplastic7.9e-3557.86Show/hide
Query:  ISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACT---GGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNE
        +SL+ ASP   SIP  +      ++F  +++    + R       +     R   +V MAKRE+EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR E
Subjt:  ISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACT---GGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNE

Query:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE
        FK+SEF RMRKRIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Subjt:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE

Arabidopsis top hitse value%identityAlignment
AT5G65220.1 Ribosomal L29 family protein2.2e-4867.26Show/hide
Query:  MISLSIASPSTISIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNFP-VVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M+SLSIA+P T +I  +   S  ++ SSF+G++I+   S RVP     +     P VVMM+KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MISLSIASPSTISIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNFP-VVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAGCCTTTCTATTGCTTCGCCTTCGACCATTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTC
GTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGCCGTAATTTCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGG
AAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTCAAGTCTAGCGAATTCCGCCGCATGCGCAAACGG
ATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCCAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACC
ACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
AGCTGAGTTCTTCATCTTCTTCCTCAAGCGCTGTGGCTGAGCGAACCCACACTGTCCACAAACTCTGAAGATGATAAGCCTTTCTATTGCTTCGCCTTCGACCATTTCTA
TCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGCCGT
AATTTCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCT
TATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTCAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTG
AAGAGGGAGTGGGCAAAAGGCTGTCCAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCA
GCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCTCAGATAAGCTCTCATCCAATGTTGTAGCTTTATGAGTTTGAAGTTGTTGAGAATGCTATTTAAACAACTTTTTAG
AAAATAATTTTCTCTCTCAAAAAATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCGTGTTGAATTCATATGCTTTCATGTCTACGAC
TTAATTCAGATAAATCCATGCAAACTGAAC
Protein sequenceShow/hide protein sequence
MISLSIASPSTISIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNFPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKR
IARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA