CuGenDBv2

Gene ID	CcUC10G194480
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribonuclease T(2)
Genome location	CicolChr10:17991654..17993401
RNA-Seq Expression	CcUC10G194480
Synteny	CcUC10G194480
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005576 - extracellular region (cellular component) GO:0016020 - membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domains	IPR001568 - Ribonuclease T2-like IPR036430 - Ribonuclease T2-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0061176.1 ribonuclease 2-like [Cucumis melo var. makuwa]

1.9e-57

82.95

Show/hide

Query:  YEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD
        +EKHGTC+APV+VGEYDYFLT LTIFSKYNVTKVL + GFVASNTEKYPIEDV+AAIK +F NATPKITCAK G VKELWLCFDKSFEPRDC+L +SCPD
Subjt:  YEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD

Query:  LIELPTYDPKEPNKVEGAIPWIADAEKII
         I+LPTY+P+EPNKVEGAIPWIAD E+II
Subjt:  LIELPTYDPKEPNKVEGAIPWIADAEKII

TYK29936.1 ribonuclease 2-like [Cucumis melo var. makuwa]

1.1e-57

81.2

Show/hide

Query:  PLLQYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLAN
        P  + EKHGTC+APV+VGEYDYFLT LTIFSKYNVTKVL + GFVASNTEKYPIEDV+AAIK +F NATPKITCAK G VKELWLCFDKSFEPRDC+L +
Subjt:  PLLQYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLAN

Query:  SCPDLIELPTYDPKEPNKVEGAIPWIADAEKII
        SCPD I+LPTY+P+EPNKVEGAIPWIAD E+II
Subjt:  SCPDLIELPTYDPKEPNKVEGAIPWIADAEKII

XP_004137162.1 ribonuclease 2 [Cucumis sativus]

1.9e-60

86.92

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP
        +YEKHGTC+APVIVGEYDYFLTT+TIFSKYNVTKVL DAGFVASNTEKYPIEDVVAAIK EF NATPKI+CAK GAVKELWLCFDKSFEPRDC+L NSCP
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP

Query:  DLIELPTYDPKEPNKVEGAIPWIADAEKII
        D I+ PTY+P+EPNKVEGAIPWIAD E+II
Subjt:  DLIELPTYDPKEPNKVEGAIPWIADAEKII

XP_008462866.1 PREDICTED: ribonuclease 2-like [Cucumis melo]

3.0e-58

83.08

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP
        +YEKHGTC+APV+VGEYDYFLT LTIFSKYNVTKVL + GFVASNTEKYPIEDV+AAIK +F NATPKITCAK G VKELWLCFDKSFEPRDC+L +SCP
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP

Query:  DLIELPTYDPKEPNKVEGAIPWIADAEKII
        D I+LPTY+P+EPNKVEGAIPWIAD E+II
Subjt:  DLIELPTYDPKEPNKVEGAIPWIADAEKII

XP_038876700.1 ribonuclease 2-like [Benincasa hispida]

2.4e-63

89.92

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD
        +YEKHGTC+APVIVGEYDYFLTTLTIFSKYNVTKVL DAGFVASNTEKYPIEDVVAAIK EFN+TPKITCAK G VKELW+CFDKSFEPRDCDL NSCPD
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD

Query:  LIELPTYDPKEPNKVEGAIPWIADAEKII
         I+LPTYDP+EPNKVEGAIPWIADAE+II
Subjt:  LIELPTYDPKEPNKVEGAIPWIADAEKII

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0P9 Ribonuclease T(2)

9.0e-61

86.92

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP
        +YEKHGTC+APVIVGEYDYFLTT+TIFSKYNVTKVL DAGFVASNTEKYPIEDVVAAIK EF NATPKI+CAK GAVKELWLCFDKSFEPRDC+L NSCP
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP

Query:  DLIELPTYDPKEPNKVEGAIPWIADAEKII
        D I+ PTY+P+EPNKVEGAIPWIAD E+II
Subjt:  DLIELPTYDPKEPNKVEGAIPWIADAEKII

A0A1S3CHX1 Ribonuclease T(2)

1.4e-58

83.08

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP
        +YEKHGTC+APV+VGEYDYFLT LTIFSKYNVTKVL + GFVASNTEKYPIEDV+AAIK +F NATPKITCAK G VKELWLCFDKSFEPRDC+L +SCP
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCP

Query:  DLIELPTYDPKEPNKVEGAIPWIADAEKII
        D I+LPTY+P+EPNKVEGAIPWIAD E+II
Subjt:  DLIELPTYDPKEPNKVEGAIPWIADAEKII

A0A5A7V3T6 Ribonuclease T(2)

9.3e-58

82.95

Show/hide

Query:  YEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD
        +EKHGTC+APV+VGEYDYFLT LTIFSKYNVTKVL + GFVASNTEKYPIEDV+AAIK +F NATPKITCAK G VKELWLCFDKSFEPRDC+L +SCPD
Subjt:  YEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD

Query:  LIELPTYDPKEPNKVEGAIPWIADAEKII
         I+LPTY+P+EPNKVEGAIPWIAD E+II
Subjt:  LIELPTYDPKEPNKVEGAIPWIADAEKII

A0A5D3E236 Ribonuclease T(2)

5.5e-58

81.2

Show/hide

Query:  PLLQYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLAN
        P  + EKHGTC+APV+VGEYDYFLT LTIFSKYNVTKVL + GFVASNTEKYPIEDV+AAIK +F NATPKITCAK G VKELWLCFDKSFEPRDC+L +
Subjt:  PLLQYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEF-NATPKITCAKNGAVKELWLCFDKSFEPRDCDLAN

Query:  SCPDLIELPTYDPKEPNKVEGAIPWIADAEKII
        SCPD I+LPTY+P+EPNKVEGAIPWIAD E+II
Subjt:  SCPDLIELPTYDPKEPNKVEGAIPWIADAEKII

A0A6J1CGP7 Ribonuclease T(2)

2.7e-57

81.4

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD
        +YEKHGTC+APVIVGE+DYFLTTLTIFSKYNVTKVL DAGFVAS+TEKY + DVVAA++  FNATPKI+CAK GAVKELWLCFDK+F+PRDCDLANSCPD
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPD

Query:  LIELPTYDPKEPNKVEGAIPWIADAEKII
         I+LPTY+P+E NKVEGAIPW+ DAE II
Subjt:  LIELPTYDPKEPNKVEGAIPWIADAEKII

SwissProt top hits

e value

%identity

Alignment

P42814 Ribonuclease 2

2.6e-28

52.17

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDC----DLAN
        ++EKHGTCS+PV   EY+YFLTTL ++ K+NVT VL  AG+VASN+EKYP+  +V AI+  F+ TP++ C K  A+ E+ +CF K F+PRDC    DL +
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDC----DLAN

Query:  --SCPDLIELPTYDP
          SCP  + LP Y P
Subjt:  --SCPDLIELPTYDP

Q4WXZ5 Ribonuclease T2-like

1.5e-07

32.48

Show/hide

Query:  QYEKHGTCSAPVIVGEY----------DYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFD------
        ++ KHGTC + +    Y          DYF  T+ IF K    + L +AG V S+TE Y ++++ AA+ K   A   I C +N A+ E+W  F+      
Subjt:  QYEKHGTCSAPVIVGEY----------DYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFD------

Query:  -KSFEPRDCD-LANSCP
          +F P + D L  +CP
Subjt:  -KSFEPRDCD-LANSCP

Q7M456 Ribonuclease Oy

2.7e-09

33.66

Show/hide

Query:  QYEKHGTC--SAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITC------AKNGAVKELWLCFDKSFEPRDC
        ++ KHGTC  S P    E  YF   L + +KYN++++LV+ G + S T  Y I +  AA+K+E      I C       K   + E+ +C  K FE   C
Subjt:  QYEKHGTC--SAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITC------AKNGAVKELWLCFDKSFEPRDC

Query:  D
        +
Subjt:  D

Arabidopsis top hits

e value

%identity

Alignment

AT2G39780.1 ribonuclease 2

1.8e-29

52.17

Show/hide

Query:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDC----DLAN
        ++EKHGTCS+PV   EY+YFLTTL ++ K+NVT VL  AG+VASN+EKYP+  +V AI+  F+ TP++ C K  A+ E+ +CF K F+PRDC    DL +
Subjt:  QYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDC----DLAN

Query:  --SCPDLIELPTYDP
          SCP  + LP Y P
Subjt:  --SCPDLIELPTYDP

AT2G39780.2 ribonuclease 2

4.3e-15

48.15

Show/hide

Query:  VLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDC----DLAN--SCPDLIELPTYDP
        VL  AG+VASN+EKYP+  +V AI+  F+ TP++ C K  A+ E+ +CF K F+PRDC    DL +  SCP  + LP Y P
Subjt:  VLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDC----DLAN--SCPDLIELPTYDP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTACCATTGCTACAGTATGAGAAGCATGGGACATGTTCAGCTCCTGTAATTGTGGGAGAATATGATTACTTCTTGACAACCCTCACCATCTTCTCCAAGTACAATGT
CACTAAAGTCTTGGTTGATGCTGGATTTGTAGCTTCCAATACTGAAAAGTATCCTATTGAAGATGTGGTAGCTGCAATTAAGAAGGAATTCAATGCAACTCCAAAGATTA
CCTGTGCTAAAAATGGGGCTGTCAAAGAACTTTGGTTATGCTTTGACAAAAGCTTTGAGCCACGTGACTGCGATCTAGCGAATTCATGCCCAGATTTGATTGAGCTCCCA
ACTTATGATCCTAAGGAGCCTAACAAGGTTGAGGGAGCAATTCCATGGATTGCTGATGCTGAAAAAATTATTTAA

mRNA sequence

Show/hide mRNA sequence

CCTTGTTATTCTATGATGATGGCCATATGAAATGTTACCATTGCTACAGTATGAGAAGCATGGGACATGTTCAGCTCCTGTAATTGTGGGAGAATATGATTACTTCTTGA
CAACCCTCACCATCTTCTCCAAGTACAATGTCACTAAAGTCTTGGTTGATGCTGGATTTGTAGCTTCCAATACTGAAAAGTATCCTATTGAAGATGTGGTAGCTGCAATT
AAGAAGGAATTCAATGCAACTCCAAAGATTACCTGTGCTAAAAATGGGGCTGTCAAAGAACTTTGGTTATGCTTTGACAAAAGCTTTGAGCCACGTGACTGCGATCTAGC
GAATTCATGCCCAGATTTGATTGAGCTCCCAACTTATGATCCTAAGGAGCCTAACAAGGTTGAGGGAGCAATTCCATGGATTGCTGATGCTGAAAAAATTATTTAACCTT
TTTTTTTTGACCTAAAAGAGATGATGAGAGCAATCCCTTTAACATTTAGGCTTTGTGTTTCCTTTTAACATTTTGGGCTGTATTTGTGATCTTTCCAAGCTCTCACCCAC
TTTGAAACTAATTTGGAAGTTTCTTTGAGTTGAAAGACTCCATTTTGTGTGGATTTGTTTTTCCAAATAAAAGAGCTATAGTAGTGAATGATAAATAATAAAGAATTGAT
GAAATTGGATGTGTTTT

Protein sequence

Show/hide protein sequence

MLPLLQYEKHGTCSAPVIVGEYDYFLTTLTIFSKYNVTKVLVDAGFVASNTEKYPIEDVVAAIKKEFNATPKITCAKNGAVKELWLCFDKSFEPRDCDLANSCPDLIELP
TYDPKEPNKVEGAIPWIADAEKII

CcUC10G194480 (gene) of Watermelon (PI 537277) v1 genome