CuGenDBv2

Gene ID	CcUC10G194630
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	classical arabinogalactan protein 4
Genome location	CicolChr10:18711686..18712258
RNA-Seq Expression	CcUC10G194630
Synteny	CcUC10G194630
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8649311.1 hypothetical protein Csa_014808 [Cucumis sativus]

2.8e-54

78.41

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP
        MASST+L++  +A LLIS AA SP PSPAP+ ESP WKWTP+NEPPSSPPTAEPP T +SP SPTISPP TPPELSPVP+S+AP  PP ANPPTLSPTAP
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAI
        PPAVKSPSHAPSPAKTKAPAPAPSK SP PAK PKSS+AP SSPPSPNG MEPP PSVAPA  K+ N  G NRFAI
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAI

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.2e-50

72.11

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP
        MAS  VL+V   ALLLISAAA SP+PSPAPSPESP WKWTP+ E PSSPP  EPP          SP  +PPELSPVPSS  P  PP ANPPTLSP A P
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP

Query:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PAVKSP HAPSP+KTKAPAPAPSKMSP PA+ PKSS  P SSPP+PNG MEPP PSVAP APK  N G  NRFAIGGSVA GLM AALIA
Subjt:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

XP_008462882.1 PREDICTED: classical arabinogalactan protein 4 [Cucumis melo]

2.2e-59

78.01

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP
        MASST+L++  +A LLISAAA SP PSPAPS ESP WKWTP N+PPSSPPTAEPP T +SP SPTISPPATPPELSPVPSS++P  PP ANPPTLSPTAP
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PPAV SPSHAPSPAKTKAPAPAPSK+SP PAK PKSS+AP SSPPSPNG MEPP PS APA  K+ N  G NRFAIGGS+A G MIAA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

XP_011654351.1 classical arabinogalactan protein 4 [Cucumis sativus]

8.5e-59

78.53

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP
        MASST+L++  +A LLIS AA SP PSPAP+ ESP WKWTP+NEPPSSPPTAEPP T +SP SPTISPP TPPELSPVP+S+AP  PP ANPPTLSPTAP
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PPAVKSPSHAPSPAKTKAPAPAPSK SP PAK PKSS+AP SSPPSPNG MEPP PSVAPA  K+ N  G NRFAIGGS+A GLMIAA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

XP_038877309.1 vegetative cell wall protein gp1-like [Benincasa hispida]

2.5e-66

85.26

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP
        MASSTVL V  VALLLISAAA SPVPSPAP PESPAWKWTP+NEPPSSPP AEPP  +SP SPTISPPATPPE+SP+PSS+AP LPPKANPPTLSPTA P
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP

Query:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        P VKSPSHAPSPAKTKAPAPAPSKMSP PAK PKSS+APASSPPSPNG MEPPAPSVAPA  K+ N G  NRFAIGGSVAVGLMIAALIA
Subjt:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0Q7 Uncharacterized protein

4.1e-59

78.53

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP
        MASST+L++  +A LLIS AA SP PSPAP+ ESP WKWTP+NEPPSSPPTAEPP T +SP SPTISPP TPPELSPVP+S+AP  PP ANPPTLSPTAP
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PPAVKSPSHAPSPAKTKAPAPAPSK SP PAK PKSS+AP SSPPSPNG MEPP PSVAPA  K+ N  G NRFAIGGS+A GLMIAA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

A0A1S3CHW9 classical arabinogalactan protein 4

1.1e-59

78.01

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP
        MASST+L++  +A LLISAAA SP PSPAPS ESP WKWTP N+PPSSPPTAEPP T +SP SPTISPPATPPELSPVPSS++P  PP ANPPTLSPTAP
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PPAV SPSHAPSPAKTKAPAPAPSK+SP PAK PKSS+AP SSPPSPNG MEPP PS APA  K+ N  G NRFAIGGS+A G MIAA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

A0A5A7V3Q7 Classical arabinogalactan protein 4

1.1e-59

78.01

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP
        MASST+L++  +A LLISAAA SP PSPAPS ESP WKWTP N+PPSSPPTAEPP T +SP SPTISPPATPPELSPVPSS++P  PP ANPPTLSPTAP
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPP-TASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAP

Query:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PPAV SPSHAPSPAKTKAPAPAPSK+SP PAK PKSS+AP SSPPSPNG MEPP PS APA  K+ N  G NRFAIGGS+A G MIAA IA
Subjt:  PPAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

A0A6J1E3R0 extensin-like

8.6e-49

70.53

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP
        MAS  VL+V   ALLLISA+A SP+PSPAPSPESP WKWTP+ + PSSPP  EPP          SP  +PPELSPVPSS  P  PP ANPPTLSP A P
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP

Query:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PAVKSP HAPSP+KTKAPAPAPSKMS  PA+ PKSS AP SSPP+PNG MEPP PSVAP APK  N G  NRFAIGG+VA GLM AALIA
Subjt:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

A0A6J1JCM0 extensin-like

1.8e-46

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Query:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP
        MAS  VL+V   ALLLISA+A SP+PS APSPES  WKWTP+ E PSSPP  EPP          SP  +PPELSPVPSS  P  P  ANPPTLSP A P
Subjt:  MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPP

Query:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA
        PAVKSP HAPSP+KTKAPAPAPSKMSP PA+ PKSS APASSPP+PNG MEPP PSVAP APK  N G  NRFAI  SVA GLM AALIA
Subjt:  PAVKSPSHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G44191.1 ECA1 gametogenesis related family protein

1.5e-05

37.11

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Query:  ISAAATSPVPSPAPSPESPAWK----WTPNNEPPSSPPTAEP--PTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPPPAVKS----P
        +S +  SP   P+P P +P+ +     +P   PPS  P+  P  P  S P     SPP  P +  P P   +P   PK +PP   P++PPP+ K     P
Subjt:  ISAAATSPVPSPAPSPESPAWK----WTPNNEPPSSPPTAEP--PTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPPPAVKS----P

Query:  SHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQS
          +PSP K   P P P K  P P KP     +P  SPP P  S  PP PS  P  PK+S
Subjt:  SHAPSPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQS

Sequences

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CDS sequence

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ATGGCTTCCTCCACCGTTCTGCATGTTTTCGCGGTGGCGCTCTTGCTGATCTCCGCCGCTGCAACCTCCCCAGTACCATCTCCAGCGCCGAGCCCCGAATCACCGGCGTG
GAAATGGACTCCCAATAACGAGCCACCGTCCTCTCCACCGACGGCCGAACCGCCTACGGCGTCGTCCCCATCTTCGCCAACAATATCTCCGCCGGCCACCCCACCGGAGC
TCAGCCCCGTTCCATCATCCCATGCGCCGATTTTACCACCCAAGGCTAACCCACCCACATTGTCGCCGACCGCTCCACCGCCGGCGGTGAAGAGCCCCAGTCATGCGCCA
TCCCCGGCAAAAACGAAAGCGCCGGCTCCGGCTCCGTCGAAAATGAGCCCACCACCGGCCAAGCCACCGAAATCTTCTCAAGCTCCGGCGAGTAGTCCCCCATCACCAAA
TGGAAGTATGGAGCCACCAGCGCCATCCGTAGCTCCGGCAGCGCCGAAGCAGAGTAACAGCGGCGGTGTAAACAGATTCGCCATTGGTGGGTCTGTTGCAGTTGGATTAA
TGATTGCGGCTTTAATCGCTTAA

mRNA sequence

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Protein sequence

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MASSTVLHVFAVALLLISAAATSPVPSPAPSPESPAWKWTPNNEPPSSPPTAEPPTASSPSSPTISPPATPPELSPVPSSHAPILPPKANPPTLSPTAPPPAVKSPSHAP
SPAKTKAPAPAPSKMSPPPAKPPKSSQAPASSPPSPNGSMEPPAPSVAPAAPKQSNSGGVNRFAIGGSVAVGLMIAALIA

CcUC10G194630 (gene) of Watermelon (PI 537277) v1 genome