CuGenDBv2

Gene ID	CcUC10G194660
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	classical arabinogalactan protein 1-like
Genome location	CicolChr10:18989566..19008559
RNA-Seq Expression	CcUC10G194660
Synteny	CcUC10G194660
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-21

79.21

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIR F  M++VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  S
        S
Subjt:  S

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

2.7e-21

79.21

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIR F  M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  S
        S
Subjt:  S

XP_022992086.1 classical arabinogalactan protein 1-like [Cucurbita maxima]

1.8e-20

78.22

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MA R F  M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  S
        S
Subjt:  S

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

6.0e-21

80.2

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIR F  M++VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SL+SPPSPP+ SPS SPSP  SP  SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  S
        S
Subjt:  S

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

8.7e-28

89.42

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIRSF AM+LVALLIGSAIAQSP ASP  SPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSP+TSPSP TSPA SPS ISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  SELG
        S  G
Subjt:  SELG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

2.3e-18

74.04

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAI S  A++ V+  I SA AQSPAASPSLSP+KSPSKAPS +    SPKSSPA APTPSSLKSPPSPPS+SPSTSPSPA+SPA    SISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  SELG
        S  G
Subjt:  SELG

A0A5A7V5Q9 Classical arabinogalactan protein 1-like

4.2e-20

75.96

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIRS  AM+LV+ LI SA AQ        SP++SPSKAPS SPSVKSPKSSPA APTPSSLKSPPSPPSTSPSTSPS + SPA SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  SELG
        S  G
Subjt:  SELG

A0A6J1E9Q3 classical arabinogalactan protein 1-like

6.1e-19

77.88

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIRSF  M+LVALLIGSAIAQSPAASPSLSP KSPSKAPSASPSVKSPKSSP AAPTP+S          SPSTSPSPA     SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  SELG
        S  G
Subjt:  SELG

A0A6J1FW49 classical arabinogalactan protein 1-like

1.3e-21

79.21

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MAIR F  M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  S
        S
Subjt:  S

A0A6J1JSK4 classical arabinogalactan protein 1-like

8.5e-21

78.22

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Query:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP
        MA R F  M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+SLKSPPSPP+ SPS SPSP      SPSSISSPPADAPAP
Subjt:  MAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAP

Query:  S
        S
Subjt:  S

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

3.3e-06

46.97

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Query:  RSFAAMLLVALLIGSAIAQSPAASPS------LSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPA
        +S   +LL ALLI SA+AQSPA +PS      +SP+ SP K  AP+ +P V SP  SPAAA TP S  SPPSPP     T    A SPA+SPS+IS  P 
Subjt:  RSFAAMLLVALLIGSAIAQSPAASPS------LSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPA

Query:  DAPAPSELGE-QYKYISAGTGHSSSFTSVFVI
        +AP P++ G    K+ S G+       +V VI
Subjt:  DAPAPSELGE-QYKYISAGTGHSSSFTSVFVI

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

2.4e-07

46.97

Show/hide

Query:  RSFAAMLLVALLIGSAIAQSPAASPS------LSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPA
        +S   +LL ALLI SA+AQSPA +PS      +SP+ SP K  AP+ +P V SP  SPAAA TP S  SPPSPP     T    A SPA+SPS+IS  P 
Subjt:  RSFAAMLLVALLIGSAIAQSPAASPS------LSPSKSPSK--APSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPA

Query:  DAPAPSELGE-QYKYISAGTGHSSSFTSVFVI
        +AP P++ G    K+ S G+       +V VI
Subjt:  DAPAPSELGE-QYKYISAGTGHSSSFTSVFVI

Sequences

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CDS sequence

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ATGATGGTAAAAAAACTCAAATGTGTAAAGATATTATATAATCAATTAAAACAATATTTGGAACAAGTGATTTTCCATATAGTCCATAAAGAAAAATTAAATGGATTTGG
AATGCATGCTTTGTTGAACTTAGTACCAATCATGTGGGTCTGGACAAAAAGAGAGAATTTAACTACAAAGAAAAAGGCAAAGTTCACAAGTGACAAGATAATGGCTTCAC
CTTTTAACTTTATTATAAAGGCAGAAAAAAATAATGTAGTAAACAAAGAAGAAAAGAAAAAAAAAACAGGGACAATCATCTCATGCTCAACATTTAACCAACCTGGCAAC
CATATGCTTCGACCCGCATTGAACGCCGGGCCGCTTGTTGAAGATAAAAACCTTTATGTCCACGCCCCAATCGTCCCCCCGGCGGAATATGTGCTTCTAAAAGATCTTTT
ATACTGTGTCCAATCCCGAAGTGTAACCAACCCGCTATTAAAGATATCGCAGAAAGAAATAATAGAAAAAGAGCTCCAGTATAAAGATCCCCATTACGACCACGTGTACG
TACAGGATCAATTGACAACTGTACCTTTATGGTGGACCCGCACTGCAGAATGCCTAAGGCAATCCGATCTAACGGGTGCCATGACTTTTAGCTTTGACTACAAGGGTTTC
AAAATGGCGATTAGAAGTTTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGCAAATCACC
ATCGAAGGCTCCATCGGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCTC
CGTCTACTTCTCCATCTCCGGCGACCTCTCCGGCGATTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGAACTCGGGGAACAATATAAATAC
ATTTCCGCTGGCACTGGACATTCATCCTCCTTCACATCGGTGTTCGTCATTAGTTGGTCGCCTTCGTTGAGCACGCTATCACCAGTGAGGGTCCAATAA

mRNA sequence

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Protein sequence

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MMVKKLKCVKILYNQLKQYLEQVIFHIVHKEKLNGFGMHALLNLVPIMWVWTKRENLTTKKKAKFTSDKIMASPFNFIIKAEKNNVVNKEEKKKKTGTIISCSTFNQPGN
HMLRPALNAGPLVEDKNLYVHAPIVPPAEYVLLKDLLYCVQSRSVTNPLLKISQKEIIEKELQYKDPHYDHVYVQDQLTTVPLWWTRTAECLRQSDLTGAMTFSFDYKGF
KMAIRSFAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPAISPSSISSPPADAPAPSELGEQYKY
ISAGTGHSSSFTSVFVISWSPSLSTLSPVRVQ

CcUC10G194660 (gene) of Watermelon (PI 537277) v1 genome