; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G195560 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G195560
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S29
Genome locationCicolChr10:20847079..20849258
RNA-Seq ExpressionCcUC10G195560
SyntenyCcUC10G195560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER36904.1 40S ribosomal protein S29 [Striga asiatica]2.6e-0647.2Show/hide
Query:  PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLEL-------
        P L  ES+PLFSP P  +LD    K   D+  P       L IP  P       PL +   K ASSPLRA SSSA ATASQSSS FVV + EL       
Subjt:  PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLEL-------

Query:  --LSGVLLPDD---AEALTCSKNNT
           SGV LP+D   A   TCSKN T
Subjt:  --LSGVLLPDD---AEALTCSKNNT
KAG7014949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-4381.54Show/hide
Query:  PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLEL-------
        PRLSDESE LFSPYPPPLLDHS VKSFFD S PFILLRAALSIPFLP+PFLSL PLP+A+LKEASSPLRA SSSAMATASQSSSGFVVADLEL       
Subjt:  PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLEL-------

Query:  ------LSGVLLPDDAEALTCSKNNTCTTI
               SGVLLPDDA+ALTCSKNNTCTTI
Subjt:  ------LSGVLLPDDAEALTCSKNNTCTTI
TrEMBL top hitse value%identityAlignment
A0A5A7PVV7 40S ribosomal protein S291.3e-0647.2Show/hide
Query:  PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLEL-------
        P L  ES+PLFSP P  +LD    K   D+  P       L IP  P       PL +   K ASSPLRA SSSA ATASQSSS FVV + EL       
Subjt:  PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLEL-------

Query:  --LSGVLLPDD---AEALTCSKNNT
           SGV LP+D   A   TCSKN T
Subjt:  --LSGVLLPDD---AEALTCSKNNT
A0A7C9B1R5 Uncharacterized protein (Fragment)3.2e-0553.06Show/hide
Query:  LSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFL-PSPFLSLLPLPVA------SLKEASSPLRALSSSAMATASQSSSGFVVADLEL
        LSD SEPLFSP    LLD SF  + FD+S P  L  AA S  F  PSPF+ L P  V       SL+ ASSP RA SSS + T S SSS  VV D EL
Subjt:  LSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFL-PSPFLSLLPLPVA------SLKEASSPLRALSSSAMATASQSSSGFVVADLEL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGGCTCTCCGATGAATCCGAGCCGCTGTTTTCGCCATATCCTCCTCCTTTGCTTGACCATAGCTTTGTGAAAAGCTTCTTTGACTTGAGCAATCCTTTCATTTTACT
AAGAGCTGCTTTGTCAATTCCATTTTTACCATCTCCATTCCTCTCATTACTTCCTTTACCAGTAGCAAGCCTCAAGGAAGCTAGCTCCCCTTTGAGGGCCTTGAGCTCCT
CAGCCATGGCAACAGCATCCCAATCTTCCTCGGGATTCGTCGTGGCTGATCTTGAGCTGCTGTCGGGAGTGCTGCTGCCTGATGATGCTGAGGCCCTGACTTGCTCAAAA
AACAATACCTGCACAACCATACTCGTAGCTTCACCTTCCGGTGCTCGCAGCAAAAGATCGCTCACTGTAGCCTCCTCTAGCTGCTGTCCCATTCGTCGAACGAGTTCTTC
TTTGGTCTCATCTCCAGATGCTAGGAAAATGGACGCTTTCAGCAATTTGGACAAGAAACTACTGGAAACACTGCCTTTCTCAGCAGACAATTGTCGACACTGCCGACTGA
TACTTCAGTGGATCCCCACATTGAAGCACACCTTTGCTAAAGCCTGGAAGATAACGCTCACAAAGATCCTCAACCCACCAGTCCTTCGGCACACTACGATTCCTGACGCC
ATTCCAGTTGGGATTGTTCCCATTTTCCTCAGCAGCACAACGGGCTGCAACTACGTTATAGGCATTAAGAGTAACAGTCATGCCGTAACAGAATTTGGCACATATCTCAA
ATGCTGCAGAACCACCCGGGATCTCTGGAATATGTTAGCCTGCGAACTTTTGGGTGTTCGCTTTCGTGTAGGAGAGATCCCATTAAGCAGTCAATGCACCAAGAAAGATT
ATTTGATTCCAAGATCT
mRNA sequenceShow/hide mRNA sequence
CCAAGGCTCTCCGATGAATCCGAGCCGCTGTTTTCGCCATATCCTCCTCCTTTGCTTGACCATAGCTTTGTGAAAAGCTTCTTTGACTTGAGCAATCCTTTCATTTTACT
AAGAGCTGCTTTGTCAATTCCATTTTTACCATCTCCATTCCTCTCATTACTTCCTTTACCAGTAGCAAGCCTCAAGGAAGCTAGCTCCCCTTTGAGGGCCTTGAGCTCCT
CAGCCATGGCAACAGCATCCCAATCTTCCTCGGGATTCGTCGTGGCTGATCTTGAGCTGCTGTCGGGAGTGCTGCTGCCTGATGATGCTGAGGCCCTGACTTGCTCAAAA
AACAATACCTGCACAACCATACTCGTAGCTTCACCTTCCGGTGCTCGCAGCAAAAGATCGCTCACTGTAGCCTCCTCTAGCTGCTGTCCCATTCGTCGAACGAGTTCTTC
TTTGGTCTCATCTCCAGATGCTAGGAAAATGGACGCTTTCAGCAATTTGGACAAGAAACTACTGGAAACACTGCCTTTCTCAGCAGACAATTGTCGACACTGCCGACTGA
TACTTCAGTGGATCCCCACATTGAAGCACACCTTTGCTAAAGCCTGGAAGATAACGCTCACAAAGATCCTCAACCCACCAGTCCTTCGGCACACTACGATTCCTGACGCC
ATTCCAGTTGGGATTGTTCCCATTTTCCTCAGCAGCACAACGGGCTGCAACTACGTTATAGGCATTAAGAGTAACAGTCATGCCGTAACAGAATTTGGCACATATCTCAA
ATGCTGCAGAACCACCCGGGATCTCTGGAATATGTTAGCCTGCGAACTTTTGGGTGTTCGCTTTCGTGTAGGAGAGATCCCATTAAGCAGTCAATGCACCAAGAAAGATT
ATTTGATTCCAAGATCT
Protein sequenceShow/hide protein sequence
PRLSDESEPLFSPYPPPLLDHSFVKSFFDLSNPFILLRAALSIPFLPSPFLSLLPLPVASLKEASSPLRALSSSAMATASQSSSGFVVADLELLSGVLLPDDAEALTCSK
NNTCTTILVASPSGARSKRSLTVASSSCCPIRRTSSSLVSSPDARKMDAFSNLDKKLLETLPFSADNCRHCRLILQWIPTLKHTFAKAWKITLTKILNPPVLRHTTIPDA
IPVGIVPIFLSSTTGCNYVIGIKSNSHAVTEFGTYLKCCRTTRDLWNMLACELLGVRFRVGEIPLSSQCTKKDYLIPRS