; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G195580 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G195580
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUBP-type domain-containing protein
Genome locationCicolChr10:20878600..20880976
RNA-Seq ExpressionCcUC10G195580
SyntenyCcUC10G195580
Gene Ontology termsGO:0009958 - positive gravitropism (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001607 - Zinc finger, UBP-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044348.1 histone deacetylase 6 [Cucumis melo var. makuwa]2.6e-6886.49Show/hide
Query:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST
        MA+EAGSSS  SN LPLI  +E+E EEEL YGA SGWV+ALTSCDHLASLSSDL HIPPP TPC++CQNPKENWLCLCCKDVFCSRFVNKHMLQH+ QST
Subjt:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGE PPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

KAG6600290.1 Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]2.9e-6784.72Show/hide
Query:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA
        MA EAGSSSSNP P ++EEE  EE  YGAESGWVEALTSCDHL SL SDL HIPPPDT C EC+NPKENWLCLCCK+VFCSRFVNKHMLQH+ QS H LA
Subjt:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAY+LKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

XP_004152271.1 histone deacetylase 6 [Cucumis sativus]1.8e-6986.99Show/hide
Query:  MAKEAGSSS--SNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHC
        MA++AGSSS  SNPL LI+E+E EEEL YGA SGWV+ALTSCDHLASLSSDL HIPPP TPC++CQNPKENW+CLCCKDVFCSRFVNKHMLQH+ QSTHC
Subjt:  MAKEAGSSS--SNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

XP_008454385.1 PREDICTED: histone deacetylase 6 [Cucumis melo]9.0e-6987.16Show/hide
Query:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST
        MA+EAGSSS  SN LPLI  +E+E EEEL YGA SGWV+ALTSCDHLASLSSDL HIPPP TPC++CQNPKENWLCLCCKDVFCSRFVNKHMLQH+ QST
Subjt:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

XP_038904979.1 histone deacetylase 6 [Benincasa hispida]3.9e-7291.67Show/hide
Query:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA
        MAKEAGSSSSNPLPLILEEE EEEL YGAESGWVEALTSCDHLA LS DL HIPPPD PC+ECQNPKENWLCL CKDVFCSRFVNKHMLQH+ Q THCLA
Subjt:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

TrEMBL top hitse value%identityAlignment
A0A061E839 Regulator of Vps4 activity in the MVB pathway protein3.7e-6076.39Show/hide
Query:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA
        MA +AG+SSS+ L +ILEEE + +L YGAESGWVEA T CDHLASLSSDL HIP P+TPC  CQ+P ENWLCLCCKDV CSRFVNKHML+H+ Q+THC+A
Subjt:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        LSYSDLSVWCF+CD YLDAQVI++LRPVHE AY+LKFGEAPP R
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

A0A0A0KT14 UBP-type domain-containing protein8.7e-7086.99Show/hide
Query:  MAKEAGSSS--SNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHC
        MA++AGSSS  SNPL LI+E+E EEEL YGA SGWV+ALTSCDHLASLSSDL HIPPP TPC++CQNPKENW+CLCCKDVFCSRFVNKHMLQH+ QSTHC
Subjt:  MAKEAGSSS--SNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHC

Query:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGEAPPFR
Subjt:  LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

A0A1S3BZ94 histone deacetylase 64.3e-6987.16Show/hide
Query:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST
        MA+EAGSSS  SN LPLI  +E+E EEEL YGA SGWV+ALTSCDHLASLSSDL HIPPP TPC++CQNPKENWLCLCCKDVFCSRFVNKHMLQH+ QST
Subjt:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGEAPPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

A0A5A7TNA2 Histone deacetylase 61.3e-6886.49Show/hide
Query:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST
        MA+EAGSSS  SN LPLI  +E+E EEEL YGA SGWV+ALTSCDHLASLSSDL HIPPP TPC++CQNPKENWLCLCCKDVFCSRFVNKHMLQH+ QST
Subjt:  MAKEAGSSS--SNPLPLI--LEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQST

Query:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY+LKFGE PPFR
Subjt:  HCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

A0A6J1D695 histone deacetylase 65.9e-6684.72Show/hide
Query:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA
        MA EAGSSSSN  P I+EEE EE+L +GAE+GWVEALT CDHLASLSSDL HIP PDT C+ECQNPKENWLCLCCK++ CSRFVNKHMLQH+ QSTHCLA
Subjt:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR
        LSYSDLSVWCFSCDAYLDAQVIQELRPV+EVAY+LKFGEAPPFR
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR

SwissProt top hitse value%identityAlignment
Q20296 Histone deacetylase 64.5e-1535.86Show/hide
Query:  AKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPD----TPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTH
        +  +GSSSS+  P         E+     +  V  L +C HL     ++  +PP      T C+ECQ   E W CL C    C RFVN+H + H   S+H
Subjt:  AKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPD----TPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTH

Query:  CLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPP
         +ALS +DLSVWC+ CD+Y+       L      A+  KFGE  P
Subjt:  CLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPP

Q54QE6 NAD-dependent deacetylase sir2A3.0e-1145Show/hide
Query:  TPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL
        T C  C +  ENW+C+ C  V CSR VN H  +HF  + H ++ S+SD S WC++CD Y+
Subjt:  TPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL

Q9H0E7 Ubiquitin carboxyl-terminal hydrolase 444.0e-1133.33Show/hide
Query:  ALTSCDHLA--SLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL
        A+ +C H+    L+ D + + P    C +C   +  W CL C  V C R++ +H L+HF +S+H +AL  +++ V+C+ CD Y+
Subjt:  ALTSCDHLA--SLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL

Q9UBN7 Histone deacetylase 68.8e-1942.2Show/hide
Query:  VEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY
        V  L  C HL ++            PC +C   +ENW+CL C  V+C R++N HMLQH G S H L LSY DLS WC+ C AY+  Q + +   V  +A+
Subjt:  VEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY

Query:  MLKFGEAPP
          KFGE  P
Subjt:  MLKFGEAPP

Q9Z2V5 Histone deacetylase 64.1e-1640.37Show/hide
Query:  VEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY
        V  L+ C HL ++            PC  C   +ENW+CL C  V+CSR+VN HM+ H   S H L LS  DLS WC+ C AY+     ++L+ V   A+
Subjt:  VEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAY

Query:  MLKFGEAPP
          KFGE  P
Subjt:  MLKFGEAPP

Arabidopsis top hitse value%identityAlignment
AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein1.0e-0950.82Show/hide
Query:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCT
        MA++A SSSS+  P     +  ++   GA SGWVEA  +CDHL +LS DL H+P PDTPC+
Subjt:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCT

AT2G14830.2 Regulator of Vps4 activity in the MVB pathway protein1.9e-5365.49Show/hide
Query:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA
        MA++A SSSS+  P     +  ++   GA SGWVEA  +CDHL +LS DL H+P PDTPC+ CQNP ENWLCLCCK+V CSRFVN+HML H  Q+ HCLA
Subjt:  MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLA

Query:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPP
        LSYSDLSVWCF C+AYLDAQ+I +LRP+H+ AY+LKFGEAPP
Subjt:  LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYMLKFGEAPP

AT2G26000.1 zinc finger (C3HC4-type RING finger) family protein4.0e-0630.16Show/hide
Query:  PPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL
        P ++ C  CQ  +  W+C+ C  V C R+   H  +H+ ++ HC +L      VW ++ D Y+
Subjt:  PPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL

AT2G26000.2 zinc finger (C3HC4-type RING finger) family protein4.0e-0630.16Show/hide
Query:  PPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL
        P ++ C  CQ  +  W+C+ C  V C R+   H  +H+ ++ HC +L      VW ++ D Y+
Subjt:  PPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWCFSCDAYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAAGAAGCCGGCTCGTCCTCTTCCAACCCACTGCCACTCATACTCGAAGAAGAAGCTGAGGAAGAACTCTCATACGGCGCCGAATCGGGATGGGTCGAGGCTCT
AACTTCTTGCGATCATCTCGCTTCCCTATCTTCCGACCTCACTCACATTCCGCCCCCTGATACTCCCTGCACCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTAT
GCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTTTGGGCAATCAACTCATTGCCTTGCTCTCAGCTACAGTGATTTGTCGGTTTGGTGT
TTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTATATGCTGAAATTTGGTGAGGCCCCGCCATTTCGATAG
mRNA sequenceShow/hide mRNA sequence
AAACTTTTGCACTTCTCTAATTAGACGCTGCAAAGTAGAAGGTAGTGGGTGTGAGTTTCATCTGTCTGTTCGTCAATGGCGAAAGAAGCCGGCTCGTCCTCTTCCAACCC
ACTGCCACTCATACTCGAAGAAGAAGCTGAGGAAGAACTCTCATACGGCGCCGAATCGGGATGGGTCGAGGCTCTAACTTCTTGCGATCATCTCGCTTCCCTATCTTCCG
ACCTCACTCACATTCCGCCCCCTGATACTCCCTGCACCGAATGTCAGAATCCCAAGGAGAACTGGTTGTGCTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAAT
AAGCACATGCTTCAACATTTTGGGCAATCAACTCATTGCCTTGCTCTCAGCTACAGTGATTTGTCGGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGAT
TCAGGAATTACGACCAGTACACGAAGTTGCCTATATGCTGAAATTTGGTGAGGCCCCGCCATTTCGATAGAATTTACCATCCTGCGGGGGAACTGAAATATCAGATTATT
TAGTGTCATAACTTTTATAGTCTCTACATATTAGATGTCTTGATTTCTTGTTTTGTAGAATTGAGTAAATGTGTTCATTGTAAGTTGTTAACTTTAAAGAGTGAGGGATA
GATTAGAATCTCCTATATTGTTAAAAAATTCTAGGAAGTTTTTACTTGAAGCTGACAAATCTTCTTATTACAAACCTTGATGATAACATTAATGAATGGTTCCCCATTTT
TGTCA
Protein sequenceShow/hide protein sequence
MAKEAGSSSSNPLPLILEEEAEEELSYGAESGWVEALTSCDHLASLSSDLTHIPPPDTPCTECQNPKENWLCLCCKDVFCSRFVNKHMLQHFGQSTHCLALSYSDLSVWC
FSCDAYLDAQVIQELRPVHEVAYMLKFGEAPPFR