CuGenDBv2

Gene ID	CcUC10G195630
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	mediator of RNA polymerase II transcription subunit 28
Genome location	CicolChr10:20918106..20920230
RNA-Seq Expression	CcUC10G195630
Synteny	CcUC10G195630
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

2.0e-32

93.83

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+ IIKKQE+LI+GWKKDLKDQLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

2.0e-32

93.83

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+ IIKKQERLI+GWKKDLK+QLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

6.5e-31

91.36

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        +DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+ IIKK ERLI+GWKKDLKDQL KHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.1e-33

96.3

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        +DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKD IIKKQERLI+GWKKDLKDQLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

1.5e-32

95.06

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        VDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+ IIKKQERLI+GWKKDLKDQLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

9.7e-33

93.83

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+ IIKKQE+LI+GWKKDLKDQLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

9.7e-33

93.83

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+ IIKKQERLI+GWKKDLK+QLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

9.7e-33

93.83

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+ IIKKQERLI+GWKKDLK+QLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

5.2e-34

96.3

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        +DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKD IIKKQERLI+GWKKDLKDQLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

5.2e-34

96.3

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        +DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKD IIKKQERLI+GWKKDLKDQLDKHNNELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

2.4e-20

62.2

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        +DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD +IKK  RL    +K +K+Q++KH +ELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.7e-21

62.2

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Query:  VDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK
        +DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD +IKK  RL    +K +K+Q++KH +ELEK
Subjt:  VDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEK

Sequences

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CDS sequence

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ATGAATGATAATCTAAAATTTCGATCACTATGGGCTCTCATAATAAGAGAAACTTGTAGATACAACAGCTATAAAGGGAGCTTTCTCTTAGTATTGTTTCATCCAACTAG
TTCATCTGCTCCCTCAAGCATGACAATCTTGAAGAAAATGAAAACCTGTTTTGTTATTGCTTCAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAAGCAGCTAAAA
AGCTTCAATTATATTTCATTGGTTTACAACGCGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGGC
ATAATCAAGAAGCAGGAGAGGCTCATTGATGGGTGGAAGAAGGATCTGAAAGACCAGTTAGACAAACATAACAATGAATTAGAGAAGTATATGGCGTCTTTGGCTTTATT
GCAAGAGTTGACTTGCAACATCTCAGTAGTGAATTTATTCAGTTACATAGTTGGGCTTCTAGAATGGGGCATCGTTGGGGCTTTCTATTTGATTGTATCGAAAGGCTCAG
GAGTTCAACTACTACATTGCATTGCCATAATCCATGTTGTATATTTGAAAGAGGCTGACCTCACTGCCCTTGTGTTACAATCCCCTTACCCCTGA

mRNA sequence

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Protein sequence

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MNDNLKFRSLWALIIRETCRYNSYKGSFLLVLFHPTSSSAPSSMTILKKMKTCFVIASVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDG
IIKKQERLIDGWKKDLKDQLDKHNNELEKYMASLALLQELTCNISVVNLFSYIVGLLEWGIVGAFYLIVSKGSGVQLLHCIAIIHVVYLKEADLTALVLQSPYP

CcUC10G195630 (gene) of Watermelon (PI 537277) v1 genome