CuGenDBv2

Gene ID	CcUC10G195650
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Zinc finger swim domain-containing protein
Genome location	CicolChr10:20927918..20930918
RNA-Seq Expression	CcUC10G195650
Synteny	CcUC10G195650
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0006364 - rRNA processing (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152266.1 zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus]

3.0e-57

94.96

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

XP_008454376.1 PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]

3.6e-58

95.8

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]

3.3e-56

93.28

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS+L AEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GACIEVK
Subjt:  KHQLAARLAASVGACIEVK

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

3.0e-57

94.12

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS+LVAEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GAC+EVK
Subjt:  KHQLAARLAASVGACIEVK

XP_038903696.1 zinc finger SWIM domain-containing protein 7 [Benincasa hispida]

2.3e-57

94.12

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASSLVAEAVWKQIESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG+PS RSIFQV+GESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA S+GACIEVK
Subjt:  KHQLAARLAASVGACIEVK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

1.5e-57

94.96

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

1.7e-58

95.8

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

8.8e-55

91.6

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS++VAEAVWKQI+STR VTDDQLSVLHFLFGKNFERATRIVDQRGVKKI GEPS RSIFQVVGESRRKEEYFCFPENFCACYSFFYD VNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GA IE K
Subjt:  KHQLAARLAASVGACIEVK

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

1.6e-56

93.28

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS+L AEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GACIEVK
Subjt:  KHQLAARLAASVGACIEVK

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

1.5e-57

94.12

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS+LVAEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GAC+EVK
Subjt:  KHQLAARLAASVGACIEVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

1.2e-43

67.23

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        M+ + LVA+AVW  IEST  VT++QLS+L  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEY CFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA+S+G   E++
Subjt:  KHQLAARLAASVGACIEVK

AT4G33925.2 unknown protein

1.2e-43

65.57

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        M+ + LVA+AVW  IEST  VT++QLS+L  LFGKN E+ATRI+D+RGVKKISG PS RSIFQVVGES+++EEY CFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKCLR
        KHQLAARLA+S+G   E++  +
Subjt:  KHQLAARLAASVGACIEVKCLR

Sequences

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CDS sequence

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ATGAGTGCGAGTTCTCTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCGACTCGATTAGTGACTGATGATCAGCTTTCAGTCTTGCATTTCTTGTTTGGCAAGAACTT
CGAGCGAGCTACGCGAATTGTTGATCAAAGAGGAGTGAAGAAAATTTCAGGCGAGCCAAGCAGACGGTCTATCTTTCAGGTTGTGGGAGAATCTCGAAGGAAAGAGGAGT
ATTTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAGTTGGCTGCAAGGCTTGCTGCT
TCAGTGGGGGCTTGTATTGAAGTTAAATGCTTGAGGTTTGAGAGGTTACGTCTTCATTTCTTGAAGGGCAGATGTAACTTTTGGGTGATGTACAACACGAAATGTAGATT
TTTTCCCTCCTTCCATTTGAGATTGAACCAATTTAAGATTTAG

mRNA sequence

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Protein sequence

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MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAA
SVGACIEVKCLRFERLRLHFLKGRCNFWVMYNTKCRFFPSFHLRLNQFKI

CcUC10G195650 (gene) of Watermelon (PI 537277) v1 genome