CuGenDBv2

Gene ID	CcUC10G195830
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	CicolChr10:21498490..21504640
RNA-Seq Expression	CcUC10G195830
Synteny	CcUC10G195830
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

4.9e-227

93.79

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L T SNPKS TILR  LPTSQRTF LSIL CSSTSQSPEANLQSAES VN GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER
        PRL  AIQGGD APDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS++IQKAER
Subjt:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE Q+EKKGFGAP TAAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+Q++SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

4.4e-228

94.48

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L T SNPKS TILR  LPTSQRTFHLSIL CSSTSQSPEANLQSAES VN+GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER
        PRL  AIQGGD APDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS++IQKAER
Subjt:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE Q+EKKGFGAPA AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ+KSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

XP_022935311.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

3.0e-224

91.53

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLT SNPKSATILR  LPT  SQR FH+SILCCSSTSQSPEAN++SAESSVN+GL+LFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA
        N+PRL  AIQGG+EAPDVWET GNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVS++IQKA
Subjt:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE+++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQ+KSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

3.9e-224

91.53

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLT SNPKSATILR  LPT  SQR FH+SILCCSSTSQSPE N++SAESSVN+GL+LFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA
        N+PRL  AIQGG+EAPDVWET GNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVS++IQKA
Subjt:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE ++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQ+KSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

4.6e-225

93.79

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH LLTFS+PKSATILR  L TSQR FH+SILC SSTSQSPEANL+SAES VN+GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFF VALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER
        PRL  AIQGGD APDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS++IQKAER
Subjt:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE Q+EKKGFGAPAT AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQ+KSE VTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

2.4e-227

93.79

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L T SNPKS TILR  LPTSQRTF LSIL CSSTSQSPEANLQSAES VN GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER
        PRL  AIQGGD APDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS++IQKAER
Subjt:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE Q+EKKGFGAP TAAA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+Q++SEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

2.1e-228

94.48

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L T SNPKS TILR  LPTSQRTFHLSIL CSSTSQSPEANLQSAES VN+GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER
        PRL  AIQGGD APDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS++IQKAER
Subjt:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE Q+EKKGFGAPA AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ+KSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

2.1e-228

94.48

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA
        MAMATLPLFH L T SNPKS TILR  LPTSQRTFHLSIL CSSTSQSPEANLQSAES VN+GL+LFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKA
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKA

Query:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
        CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI
Subjt:  CCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNI

Query:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER
        PRL  AIQGGD APDVWETAGNLAVNVGGI+VFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVS++IQKAER
Subjt:  PRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAER

Query:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL
        FRTELLRRGVLLVPVIWG+GRE Q+EKKGFGAPA AAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQ+KSEGVTPGEDVYIIL
Subjt:  FRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIIL

Query:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RLDGR+RRSGRGMPDWQKIIEELPPMEALLSKLE+
Subjt:  RLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

A0A6J1F472 protein LOW PSII ACCUMULATION 1, chloroplastic

1.4e-224

91.53

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLT SNPKSATILR  LPT  SQR FH+SILCCSSTSQSPEAN++SAESSVN+GL+LFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA
        N+PRL  AIQGG+EAPDVWET GNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVS++IQKA
Subjt:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE+++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQ+KSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

1.9e-224

91.53

Show/hide

Query:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN
        + MATLP+FHQLLT SNPKSATILR  LPT  SQR FH+SILCCSSTSQSPE N++SAESSVN+GL+LFSKGRVKEALVQFEAAL+M+PNPMEAQAALYN
Subjt:  MAMATLPLFHQLLTFSNPKSATILRTPLPT--SQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYN

Query:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
        KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF
Subjt:  KACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLF

Query:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA
        N+PRL  AIQGG+EAPDVWET GNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVS++IQKA
Subjt:  NIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKA

Query:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI
        ERFRTELLRRGVLLVPVIW +GRE ++EKKGFGAPA A + ALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQ+KSEGVTPGEDVYI
Subjt:  ERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYI

Query:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        ILRLDGRVRRSGRGMPDWQKIIEELPPM+ALLSKLER
Subjt:  ILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

3.3e-170

68.94

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Query:  MAMATLPLF--HQLLTFSNPKSATILRTP-LPTSQRTF---------HLSILCCSSTSQS---PEANLQ----SAESSVNIGLELFSKGRVKEALVQFEA
        MA+AT P    H     SN  S    R P LP    T          HL +   SS+S S   P  N      +AE  VN GL+LF +GRVK+ALVQFE 
Subjt:  MAMATLPLF--HQLLTFSNPKSATILRTP-LPTSQRTF---------HLSILCCSSTSQS---PEANLQ----SAESSVNIGLELFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL+ AI+GGD AP++ ET GN A+N+GGIVV V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI
        VILAGKKETV+ ++QKA+RFRTELLRRGVLLVPV+WG+ +  ++EKKGFGA ++ AAT+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI
Subjt:  VILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI

Query:  RDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RDQ+ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLER
Subjt:  RDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

2.4e-171

68.94

Show/hide

Query:  MAMATLPLF--HQLLTFSNPKSATILRTP-LPTSQRTF---------HLSILCCSSTSQS---PEANLQ----SAESSVNIGLELFSKGRVKEALVQFEA
        MA+AT P    H     SN  S    R P LP    T          HL +   SS+S S   P  N      +AE  VN GL+LF +GRVK+ALVQFE 
Subjt:  MAMATLPLF--HQLLTFSNPKSATILRTP-LPTSQRTF---------HLSILCCSSTSQS---PEANLQ----SAESSVNIGLELFSKGRVKEALVQFEA

Query:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR
        AL++ PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR
Subjt:  ALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVR

Query:  RFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP
        +FFY A +AAAGIS+ F +PRL+ AI+GGD AP++ ET GN A+N+GGIVV V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Subjt:  RFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP

Query:  VILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI
        VILAGKKETV+ ++QKA+RFRTELLRRGVLLVPV+WG+ +  ++EKKGFGA ++ AAT+LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WI
Subjt:  VILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWI

Query:  RDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER
        RDQ+ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPM+ +LSKLER
Subjt:  RDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

4.4e-32

31.23

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Query:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RLI A+     + +V E    L V++G   +F  L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETAGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAE
          N+++ +  LR   R VI AG  E +  + ++++ +   L+ RGV++V                      A AT   S   +F++   +    S+ + +
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGFGAPATAAATALPSIGEDFEKRAQSITAKSKLKAE

Query:  IRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL
        + +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P WQ  + +LPP++ + + L
Subjt:  IRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGGCTACTCTTCCTCTGTTCCACCAGCTCCTCACCTTCTCAAACCCCAAATCAGCCACCATTCTCAGGACCCCGCTACCCACTTCTCAAAGGACTTTCCATCT
CTCCATTCTATGTTGCTCTTCTACTTCTCAGTCTCCAGAAGCTAATCTCCAATCTGCAGAGTCCTCTGTCAATATCGGCCTCGAGCTCTTCTCTAAAGGACGGGTCAAAG
AAGCTTTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAG
AAAGCCGCTGACTGTCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAATGATCCTGATTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGA
ATTGCAAGAAGAGGCTAGGATGGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTCCGTGGGGTTCGGAGGTTCT
TTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGTTGTTGTTTAATATACCCAGGTTAATTCATGCTATTCAAGGTGGCGATGAAGCTCCTGATGTTTGGGAAACTGCT
GGAAATTTAGCTGTTAATGTTGGAGGTATTGTTGTGTTTGTGGCACTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACATT
ATCAAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTGCAT
CCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCTTAGTTCCTGTCATATGGGGCCAAGGTAGGGAATCCCAACTAGAAAAGAAAGGATTT
GGTGCTCCAGCCACCGCTGCTGCTACTGCTCTGCCATCAATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCAAAGTTGAAAGCTGAAATTCGATT
CAGGGCTGAGGTTATATCACCTGCAGAGTGGGAAAGTTGGATAAGAGACCAGGAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTATATAATATTGCGATTGGATG
GTCGAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGAAGCTCTTCTTAGCAAGCTAGAAAGATGA

mRNA sequence

Show/hide mRNA sequence

TAATCCGTGGACGTGTGTGGCATACGCGCGGTTCATTCATCTTCTTTCATCCTTTATTGAGATATAACATTTTGATTTTCTGCCATGTGAGGTCTAAACTTCCCAATGGC
TATGGCTACTCTTCCTCTGTTCCACCAGCTCCTCACCTTCTCAAACCCCAAATCAGCCACCATTCTCAGGACCCCGCTACCCACTTCTCAAAGGACTTTCCATCTCTCCA
TTCTATGTTGCTCTTCTACTTCTCAGTCTCCAGAAGCTAATCTCCAATCTGCAGAGTCCTCTGTCAATATCGGCCTCGAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCT
TTAGTCCAGTTTGAAGCAGCACTGAATATGGATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGC
CGCTGACTGTCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTCTGAATGATCCTGATTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGC
AAGAAGAGGCTAGGATGGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTTCAAGCACCTTTCCGTGGGGTTCGGAGGTTCTTTTAT
GTGGCACTATCTGCAGCTGCTGGAATTTCGTTGTTGTTTAATATACCCAGGTTAATTCATGCTATTCAAGGTGGCGATGAAGCTCCTGATGTTTGGGAAACTGCTGGAAA
TTTAGCTGTTAATGTTGGAGGTATTGTTGTGTTTGTGGCACTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACATTATCAA
GGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTGCATCCATT
CAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCTTAGTTCCTGTCATATGGGGCCAAGGTAGGGAATCCCAACTAGAAAAGAAAGGATTTGGTGC
TCCAGCCACCGCTGCTGCTACTGCTCTGCCATCAATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCAAAGTTGAAAGCTGAAATTCGATTCAGGG
CTGAGGTTATATCACCTGCAGAGTGGGAAAGTTGGATAAGAGACCAGGAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTATATAATATTGCGATTGGATGGTCGA
GTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGAAGCTCTTCTTAGCAAGCTAGAAAGATGAGATAAACAGAAACGAGA
TACATACACCATGCAACTATCGATGGCGTCACTTCTGCTACCATTCAACTTCCACACCAATACGCAGAAGAGTAAACTGTCTAGTAATACATAGTCTTAGCTAGTTGTTT
TTTTGTTATTACAAGTGTGTTTGGAAGATGGGTGATTGATCCAAACCTGAGACCACTCTGTTCTGTTTTATTTCCTGTTCCCATCTCTTCAGAGTCCACAAGAAGATGAT
AAGTTTTTCTGGG

Protein sequence

Show/hide protein sequence

MAMATLPLFHQLLTFSNPKSATILRTPLPTSQRTFHLSILCCSSTSQSPEANLQSAESSVNIGLELFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGK
KAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNIPRLIHAIQGGDEAPDVWETA
GNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSASIQKAERFRTELLRRGVLLVPVIWGQGRESQLEKKGF
GAPATAAATALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQEKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLER

CcUC10G195830 (gene) of Watermelon (PI 537277) v1 genome