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CcUC10G195850 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G195850
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionHistidine--tRNA ligase
Genome locationCicolChr10:21516535..21516768
RNA-Seq ExpressionCcUC10G195850
SyntenyCcUC10G195850
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044357.1 hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa]2.0e-1171.88Show/hide
Query:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLA--KNRGVGMRKNQKEDPIRTIMLLGSWSHT
        M  QH  S +S  SSRTIGEKL QAY++VKV LA  KNRGVGMR+NQKEDPIRTIM LG WS T
Subjt:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLA--KNRGVGMRKNQKEDPIRTIMLLGSWSHT

KAB2605171.1 hypothetical protein D8674_004888 [Pyrus ussuriensis x Pyrus communis]3.2e-0443.04Show/hide
Query:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNRG------------VGMRK---NQKEDPIRTIMLLGSWSHT
        M PQ++C + S   ES+R   E L QAYQ   VV+A + G            +G R+   N  EDPIRT++ LGSWSHT
Subjt:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNRG------------VGMRK---NQKEDPIRTIMLLGSWSHT

KAE8009525.1 hypothetical protein FH972_005957 [Carpinus fangiana]1.1e-0442.86Show/hide
Query:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR---GVGMRKNQK----------EDPIRTIMLLGSWSHT
        M PQH   D S   +S RT+GEKL +AY+  ++ +A NR   G  +  +++          EDPIRT+M LGSWSHT
Subjt:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR---GVGMRKNQK----------EDPIRTIMLLGSWSHT

KGN52786.1 hypothetical protein Csa_015138 [Cucumis sativus]7.5e-1469.35Show/hide
Query:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWSHT
        M  QH  S +S  SSRT+GEKL QAY++VKV L KN+GVG R+NQ+EDPIRTIM LGSWSHT
Subjt:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWSHT

TQD76427.1 hypothetical protein C1H46_038055 [Malus baccata]4.1e-0440.51Show/hide
Query:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAK------------NRGVGMR---KNQKEDPIRTIMLLGSWSHT
        M PQ++C + S   ES+R   E L QAYQ   VV+A+            ++ +G R    N  +DPIRT++ LGSWSHT
Subjt:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAK------------NRGVGMR---KNQKEDPIRTIMLLGSWSHT

TrEMBL top hitse value%identityAlignment
A0A0A0KY58 Uncharacterized protein3.6e-1469.35Show/hide
Query:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWSHT
        M  QH  S +S  SSRT+GEKL QAY++VKV L KN+GVG R+NQ+EDPIRTIM LGSWSHT
Subjt:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWSHT

A0A2N9EC73 Uncharacterized protein1.8e-0544.87Show/hide
Query:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR------------GVGMRK--NQKEDPIRTIMLLGSWSHT
        M PQ +  D S   ES RT+GEK  QAY+   + +AKNR             +  RK  +  EDPIRT+M LGSWSHT
Subjt:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR------------GVGMRK--NQKEDPIRTIMLLGSWSHT

A0A5A7TR66 Uncharacterized protein9.9e-1271.88Show/hide
Query:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLA--KNRGVGMRKNQKEDPIRTIMLLGSWSHT
        M  QH  S +S  SSRTIGEKL QAY++VKV LA  KNRGVGMR+NQKEDPIRTIM LG WS T
Subjt:  MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLA--KNRGVGMRKNQKEDPIRTIMLLGSWSHT

A0A5N5FU74 Uncharacterized protein1.5e-0443.04Show/hide
Query:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNRG------------VGMRK---NQKEDPIRTIMLLGSWSHT
        M PQ++C + S   ES+R   E L QAYQ   VV+A + G            +G R+   N  EDPIRT++ LGSWSHT
Subjt:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNRG------------VGMRK---NQKEDPIRTIMLLGSWSHT

A0A5N6QQU4 Uncharacterized protein5.3e-0542.86Show/hide
Query:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR---GVGMRKNQK----------EDPIRTIMLLGSWSHT
        M PQH   D S   +S RT+GEKL +AY+  ++ +A NR   G  +  +++          EDPIRT+M LGSWSHT
Subjt:  MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR---GVGMRKNQK----------EDPIRTIMLLGSWSHT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTTTACTCTACTATCTCTTCTTTTGCATACATAGACAATATGAACCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACT
TGTTCAAGCTTATCAGAATGTGAAGGTTGTCCTGGCAAAAAATCGAGGCGTTGGAATGAGAAAAAACCAAAAGGAAGATCCTATTAGAACTATAATGCTCTTGGGATCGT
GGAGTCATACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTTTACTCTACTATCTCTTCTTTTGCATACATAGACAATATGAACCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACT
TGTTCAAGCTTATCAGAATGTGAAGGTTGTCCTGGCAAAAAATCGAGGCGTTGGAATGAGAAAAAACCAAAAGGAAGATCCTATTAGAACTATAATGCTCTTGGGATCGT
GGAGTCATACTTGA
Protein sequenceShow/hide protein sequence
MFVYSTISSFAYIDNMNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWSHT