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CcUC10G196650 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G196650
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCicolChr10:22927667..22940792
RNA-Seq ExpressionCcUC10G196650
SyntenyCcUC10G196650
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
Q4PSQ5 Probable pectinesterase 662.5e-0449.02Show/hide
Query:  TKLEVNCNGAGANTSSHRP-----NAGEVRYFTQVSFIDQKGWNSRLPLLG
        T +E  C GAGA+TS   P     +  EV  F  VSFIDQ GW SR P+ G
Subjt:  TKLEVNCNGAGANTSSHRP-----NAGEVRYFTQVSFIDQKGWNSRLPLLG
Arabidopsis top hitse value%identityAlignment
AT2G19150.1 Pectin lyase-like superfamily protein2.5e-0442.86Show/hide
Query:  TKLEVNCNGAGANTSSHRP-----NAGEVRYFTQVSFIDQKGWNSRLPL
        T +E  C G GA+TS   P     +  +V  FT ++FID++GW SRLP+
Subjt:  TKLEVNCNGAGANTSSHRP-----NAGEVRYFTQVSFIDQKGWNSRLPL
AT2G47280.1 Pectin lyase-like superfamily protein1.7e-0549.02Show/hide
Query:  TKLEVNCNGAGANTSSHRP-----NAGEVRYFTQVSFIDQKGWNSRLPLLG
        T +E  C GAGA+TS   P     +  EV  F  VSFIDQ GW SR P+ G
Subjt:  TKLEVNCNGAGANTSSHRP-----NAGEVRYFTQVSFIDQKGWNSRLPLLG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCTTTCTATTTTTTGCGTTGTCGACGTAATTTCTGATGCTCAACATCATGCTGTTTCAGCCATGTGGGAGACTATACATAAGAAAATCATGTGTACTCCTTTTGA
TAAACTTCTTTACCTTGACGATGAAACTCGTAAGATATTTAAGGTACCGTATGATAAAAGCAGCACATATGCCAAGAAGAATACACTTTTGGAGTGTGCTGTAGAGGCAT
TGCGCTCTAATTATCCAAATAAATCGAGTGGTGAGTTGTTGTTGCGTGAGTTTTACACATGTGCAAAATCGGAAGTGTATGACCGTCAAATTTTAGTACAAAGCATTAAA
TGTCAAGCTTCGTCGACAAAATTGGAGGTGAATTGTAATGGAGCAGGAGCAAACACTTCAAGTCATAGACCCAATGCTGGGGAGGTTAGATACTTCACACAAGTTTCTTT
CATTGATCAAAAAGGTTGGAATTCAAGGCTTCCTCTACTTGGAAGCCACTTCCTTGATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCTTTCTATTTTTTGCGTTGTCGACGTAATTTCTGATGCTCAACATCATGCTGTTTCAGCCATGTGGGAGACTATACATAAGAAAATCATGTGTACTCCTTTTGA
TAAACTTCTTTACCTTGACGATGAAACTCGTAAGATATTTAAGGTACCGTATGATAAAAGCAGCACATATGCCAAGAAGAATACACTTTTGGAGTGTGCTGTAGAGGCAT
TGCGCTCTAATTATCCAAATAAATCGAGTGGTGAGTTGTTGTTGCGTGAGTTTTACACATGTGCAAAATCGGAAGTGTATGACCGTCAAATTTTAGTACAAAGCATTAAA
TGTCAAGCTTCGTCGACAAAATTGGAGGTGAATTGTAATGGAGCAGGAGCAAACACTTCAAGTCATAGACCCAATGCTGGGGAGGTTAGATACTTCACACAAGTTTCTTT
CATTGATCAAAAAGGTTGGAATTCAAGGCTTCCTCTACTTGGAAGCCACTTCCTTGATAATTAA
Protein sequenceShow/hide protein sequence
MLLSIFCVVDVISDAQHHAVSAMWETIHKKIMCTPFDKLLYLDDETRKIFKVPYDKSSTYAKKNTLLECAVEALRSNYPNKSSGELLLREFYTCAKSEVYDRQILVQSIK
CQASSTKLEVNCNGAGANTSSHRPNAGEVRYFTQVSFIDQKGWNSRLPLLGSHFLDN