; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G196660 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G196660
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTranscription factor UPBEAT1
Genome locationCicolChr10:22949220..22949498
RNA-Seq ExpressionCcUC10G196660
SyntenyCcUC10G196660
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]1.2e-2678.72Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSR-SLRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KK +EM SR S  SEKRICLKRIR+LRKMIPKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSR-SLRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

KAF3972052.1 hypothetical protein CMV_004404 [Castanea mollissima]1.1e-0861.54Show/hide
Query:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V++L GSDE
Subjt:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]3.2e-2778.72Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSRSLR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KK +EM SRS R SEKRICLKRIRRL+KM+PKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSRSLR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

XP_023896430.1 transcription factor UPBEAT1 [Quercus suber]1.1e-0861.54Show/hide
Query:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ++R+R L+++IP SESM L+GLF+ETADYI+ LQM+VR MQ +V++L GSDE
Subjt:  LKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

XP_034911859.1 transcription factor UPBEAT1-like [Populus alba]1.9e-0862.75Show/hide
Query:  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        +R+R L+K+IP SESM L+GLF+ETADYI+ LQM+VR+MQ +V +L GSD+
Subjt:  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein1.5e-2778.72Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSRSLR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KK +EM SRS R SEKRICLKRIRRL+KM+PKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSRSLR-SEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A2N9IQ45 Uncharacterized protein1.6e-0860.78Show/hide
Query:  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        +R++ L+K+IP  +SM L+GLFKETADYI+ LQM+VR MQ +V++L GSDE
Subjt:  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A4V5ZXB7 Uncharacterized protein9.4e-0962.75Show/hide
Query:  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        +R+R L+K+IP SESM L+GLF+ETADYI+ LQM+VR+MQ +V +L GSD+
Subjt:  KRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A5A7T9M0 Basic helix-loop-helix protein5.9e-2778.72Show/hide
Query:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSR-SLRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE
        ME+ AK+T    VSD++I KQV KK +EM SR S  SEKRICLKRIR+LRKMIPKSESMELNGLF+ETADYIVWLQMKVRMMQALVH+LNGSDE
Subjt:  MEVCAKETLRNQVSDKQIVKQV-KKNLEMSSR-SLRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE

A0A7J0G0Q9 Uncharacterized protein2.7e-0853.45Show/hide
Query:  RSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSD
        R  K +  K++R LRK++PKSESM L+GLF++TA+YI+ LQM+V++MQ +V +L+GS+
Subjt:  RSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSD

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT15.5e-0636.9Show/hide
Query:  LRNQVSDKQIVKQV----KKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL
        +R Q + + +VK++    +K++E S R  R+  R    R++ L++++P +++ E L+GLF++TADYI+ L+MKV++MQ +V +L
Subjt:  LRNQVSDKQIVKQV----KKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators3.9e-0736.9Show/hide
Query:  LRNQVSDKQIVKQV----KKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL
        +R Q + + +VK++    +K++E S R  R+  R    R++ L++++P +++ E L+GLF++TADYI+ L+MKV++MQ +V +L
Subjt:  LRNQVSDKQIVKQV----KKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESME-LNGLFKETADYIVWLQMKVRMMQALVHIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAATCTAGAGATGTCGTCGAGGTCGTTGAGATCGGAGAA
GAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAAAGAGACAGCAGATTATATTGTATGGTTGC
AAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTGCGCAAAAGAAACGCTTCGAAATCAAGTCTCGGATAAGCAAATCGTGAAACAAGTCAAGAAGAATCTAGAGATGTCGTCGAGGTCGTTGAGATCGGAGAA
GAGGATTTGCTTGAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAATCTATGGAGTTGAATGGGCTTTTTAAAGAGACAGCAGATTATATTGTATGGTTGC
AAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATATACTGAATGGCTCTGATGAGTGA
Protein sequenceShow/hide protein sequence
MEVCAKETLRNQVSDKQIVKQVKKNLEMSSRSLRSEKRICLKRIRRLRKMIPKSESMELNGLFKETADYIVWLQMKVRMMQALVHILNGSDE