CuGenDBv2

Gene ID	CcUC10G197380
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal protein S21 family protein isoform 1
Genome location	CicolChr10:23958806..23961638
RNA-Seq Expression	CcUC10G197380
Synteny	CcUC10G197380
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001911 - Ribosomal protein S21

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048381.1 Ribosomal protein S21 family protein isoform 1 [Cucumis melo var. makuwa]

3.4e-37

84.4

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV
        MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKREQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV

Query:  RK----HFL
        RK    HF+
Subjt:  RK----HFL

KAG6581566.1 Cycloartenol-C-24-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-37

84.91

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HTN LQH     QQWRGIRVKVLNGNL++AL F+QRKM+SSGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI

Query:  LIKKVR
        LIKKVR
Subjt:  LIKKVR

XP_022934889.1 uncharacterized protein LOC111441929 [Cucurbita moschata]

3.4e-37

84.91

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HTN LQH     QQWRGIRVKVLNGNL++AL F+QRKM+SSGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI

Query:  LIKKVR
        LIKKVR
Subjt:  LIKKVR

XP_022982723.1 uncharacterized protein LOC111481507 [Cucurbita maxima]

4.4e-37

84.91

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HTN L+H     QQWRGIRVKVLNGNL++AL F+QRKMQSSGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI

Query:  LIKKVR
        LIKKVR
Subjt:  LIKKVR

XP_038903160.1 30S ribosomal protein S21 [Benincasa hispida]

8.1e-39

92.08

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV
        MNSLARNISCSIRSSIHTN LQHQQ RGIRVKVLNGNL+QAL FM+RKMQ+SGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAILIKKV
Subjt:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV

Query:  R
        R
Subjt:  R

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CG17 uncharacterized protein LOC103500324

6.2e-37

88.12

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV
        MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKREQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV

Query:  R
        R
Subjt:  R

A0A5A7U491 Ribosomal protein S21 family protein isoform 1

1.6e-37

84.4

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV
        MNSLARNISCSIRSSIHTN LQ+QQWRGIRVKVL G L++AL  +QRKMQSSGIERLIKREQIHHIKNSEKRVLARK LE KIRSQDLARKLK ILIKKV
Subjt:  MNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKV

Query:  RK----HFL
        RK    HF+
Subjt:  RK----HFL

A0A6J1DEG8 uncharacterized protein LOC111019699

1.8e-36

81.82

Show/hide

Query:  MNSLARNISCSIRSSIHTND---------LQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARK
        MNSLARN+SC IR SIHT D          Q QQWRGIRVKVLNGNL++ALKF+QRKMQSSGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARK
Subjt:  MNSLARNISCSIRSSIHTND---------LQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

A0A6J1F3V2 uncharacterized protein LOC111441929

1.6e-37

84.91

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HTN LQH     QQWRGIRVKVLNGNL++AL F+QRKM+SSGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI

Query:  LIKKVR
        LIKKVR
Subjt:  LIKKVR

A0A6J1J5L6 uncharacterized protein LOC111481507

2.1e-37

84.91

Show/hide

Query:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI
        MNSL+RN+SCSIRSS+HTN L+H     QQWRGIRVKVLNGNL++AL F+QRKMQSSGIERLIKREQ HHIKNSEKRVLARKNLE KIRSQDLARKLKAI
Subjt:  MNSLARNISCSIRSSIHTNDLQH-----QQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAI

Query:  LIKKVR
        LIKKVR
Subjt:  LIKKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G26360.1 Ribosomal protein S21 family protein

3.9e-23

60.78

Show/hide

Query:  MNSLARNISCSI-RSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKK
        MN++A+ ++  + R S++    Q QQ RGIRVKV + +LD+AL  +Q+KMQSSG+ERLIK  Q HHIKNSEK+VLARKNLE +I+S D ARKL++ILIKK
Subjt:  MNSLARNISCSI-RSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIERLIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKK

Query:  VR
        VR
Subjt:  VR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCGACCGTCCTTCACCGCCACACCTCACTCTCTCACGGCCACCTTCCATCGCCGCCCCCTCACTCTCAAGGCCGTTTGTCACCGCCTTCCCATTCCGCCATCGAC
TTAGCCCACTCCATCTCCCGTAAGAACGACAAACCGAGGGAAATGAATTCGTTGGCCCGGAACATATCATGCTCCATCAGATCTTCGATTCACACCAATGATCTG
CAGCACCAGCAATGGAGGGGAATCCGAGTGAAGGTACTGAACGGGAATCTAGATCAGGCACTGAAATTTATGCAAAGGAAGATGCAATCGAGTGGAATCGAGCGA
CTGATTAAACGCGAACAGATTCATCATATCAAGAATTCCGAGAAACGAGTTTTGGCCAGAAAGAATTTGGAGCACAAAATTCGATCGCAGGACCTCGCTCGCAAA
CTCAAAGCCATCCTTATAAAGAAAGTCAGAAAACACTTTTTGAACTTTGTC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

STVLHRHTSLSHGHLPSPPPHSQGRLSPPSHSAIDLAHSISRKNDKPREMNSLARNISCSIRSSIHTNDLQHQQWRGIRVKVLNGNLDQALKFMQRKMQSSGIER
LIKREQIHHIKNSEKRVLARKNLEHKIRSQDLARKLKAILIKKVRKHFLNFV

CcUC10G197380 (gene) of Watermelon (PI 537277) v1 genome