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CcUC10G199030 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G199030
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCicolChr10:25822240..25822669
RNA-Seq ExpressionCcUC10G199030
SyntenyCcUC10G199030
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581055.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IVTWS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

KAG7017786.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IVTWS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

XP_008464928.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo]1.6e-1083.33Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IVTWS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE

XP_022935091.1 putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 [Cucurbita moschata]2.7e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IVTWS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

XP_022935092.1 putative pentatricopeptide repeat-containing protein At3g01580 isoform X2 [Cucurbita moschata]2.7e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IVTWS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

TrEMBL top hitse value%identityAlignment
A0A0A0LFK2 Uncharacterized protein1.7e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        +KVK+IVTWS I+AGYGI GQGRE LKLF+KMIETSEVMPNE          +   +IE G ++ + +    R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

A0A1S3CMP5 putative pentatricopeptide repeat-containing protein At3g015807.8e-1183.33Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IVTWS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE

A0A5A7UUL5 Putative pentatricopeptide repeat-containing protein7.8e-1183.33Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IVTWS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE

A0A6J1F3K2 putative pentatricopeptide repeat-containing protein At3g01580 isoform X11.3e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IVTWS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

A0A6J1F4M2 putative pentatricopeptide repeat-containing protein At3g01580 isoform X21.3e-1051.25Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IVTWS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVTDD-RLHPESDH

SwissProt top hitse value%identityAlignment
Q9SS97 Putative pentatricopeptide repeat-containing protein At3g015808.0e-0533.33Show/hide
Query:  VKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHS-SVTDDRLHPESDH
        +K+ V W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G  +    V D RL P  +H
Subjt:  VKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHS-SVTDDRLHPESDH

Arabidopsis top hitse value%identityAlignment
AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein4.1e-0444.19Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETS-EVMPNE
        MK K++ +W+ +++GYG  G  RE + LF+KM E + +V PNE
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETS-EVMPNE

AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.7e-0633.33Show/hide
Query:  VKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHS-SVTDDRLHPESDH
        +K+ V W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G  +    V D RL P  +H
Subjt:  VKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHS-SVTDDRLHPESDH

AT3G12770.1 mitochondrial editing factor 223.1e-0426.32Show/hide
Query:  KEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSMIEAGTEVHSSVTDDRLHPESDH
        +++V WS ++ GYG+ G+ RE + L+ + +E   V PN+    G         M+  G    + + D +++P+  H
Subjt:  KEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSMIEAGTEVHSSVTDDRLHPESDH

AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein1.4e-0429.79Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVT--DDRLHPESDHIHRLQGNLRDEGY
        M  ++IV+W+ ++ G+GI G G+E L LF+ M ET  V P+E          +   +++ G ++ +S++  D  + P  DH + +   L   GY
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSMIEAGTEVHSSVT--DDRLHPESDHIHRLQGNLRDEGY

AT3G56550.1 Pentatricopeptide repeat (PPR) superfamily protein5.3e-0429.73Show/hide
Query:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSMIEAGTEVHSSVTDDRLH
        M+ ++++TW+ ++ GYG+ G G E +  F KM+  S V PN     G       Q +++ G E H  +   + H
Subjt:  MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSMIEAGTEVHSSVTDDRLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTAAAAGAAATAGTTACCTGGAGTCTGATCGTGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGA
AGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTATGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTC
ATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTAAAAGAAATAGTTACCTGGAGTCTGATCGTGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACATCAGA
AGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTATGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCTGACCACATTC
ATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA
Protein sequenceShow/hide protein sequence
MKVKEIVTWSLIVAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSMIEAGTEVHSSVTDDRLHPESDHIHRLQGNLRDEGYFKILFTEH