; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G200540 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G200540
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRibonuclease MC-like
Genome locationCicolChr10:27467709..27468627
RNA-Seq ExpressionCcUC10G200540
SyntenyCcUC10G200540
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053769.1 ribonuclease MC-like [Cucumis melo var. makuwa]5.7e-3363.3Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        ++DLN+VWPNV+TGNN FFWG+EWNKHGICSESKFDQA YFQ AIN+R+ I+LL V+R GG+VPNG  KAKQR+E+ I+S F  DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

XP_004147499.1 ribonuclease MC [Cucumis sativus]5.7e-3364.22Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        +NDLN+VWPNV+TGNN FFWG+EWNKHGICSESKFD+A YFQ AIN+R+ I+LL V+R GGV PNG  KAKQR+E+ I+S FG DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

XP_008443402.1 PREDICTED: ribonuclease MC-like [Cucumis melo]5.7e-3363.3Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        ++DLN+VWPNV+TGNN FFWG+EWNKHGICSESKFDQA YFQ AIN+R+ I+LL V+R GG+VPNG  KAKQR+E+ I+S F  DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

XP_022142280.1 ribonuclease MC-like [Momordica charantia]1.7e-2963.74Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIK
        QNDLN VWPNVITGNN FFWG+EWNKHGICSESKFD   YFQ AIN+R  ++L+  +RVGG+ PNG  K++QR++S I ++FG +P+LR +
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIK

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]2.7e-3567.89Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        +NDLN+VWPNVITGNN FFWG+EWNKHGICSESKFDQA YFQ AIN+R+ I+LL VMR GGV+PNG  KAKQR+ES+I+S FG DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)2.7e-3364.22Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        +NDLN+VWPNV+TGNN FFWG+EWNKHGICSESKFD+A YFQ AIN+R+ I+LL V+R GGV PNG  KAKQR+E+ I+S FG DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

A0A1S3B8Q3 Ribonuclease T(2)2.7e-3363.3Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        ++DLN+VWPNV+TGNN FFWG+EWNKHGICSESKFDQA YFQ AIN+R+ I+LL V+R GG+VPNG  KAKQR+E+ I+S F  DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

A0A5A7UJY4 Ribonuclease MC-like2.7e-3363.3Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        ++DLN+VWPNV+TGNN FFWG+EWNKHGICSESKFDQA YFQ AIN+R+ I+LL V+R GG+VPNG  KAKQR+E+ I+S F  DPILR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMTMLSLLY
        L+T + + +
Subjt:  LMTMLSLLY

A0A6J1CKH7 Ribonuclease T(2)8.2e-3063.74Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIK
        QNDLN VWPNVITGNN FFWG+EWNKHGICSESKFD   YFQ AIN+R  ++L+  +RVGG+ PNG  K++QR++S I ++FG +P+LR +
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIK

A0A6J1FBD8 Ribonuclease T(2)1.4e-2963.11Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA
        +NDLN+VWPN+ITGN+ +FWG+EWN HGICSESKFDQ  YFQ +INLR+ INLL  +RV GVVPNG  K+KQR+ES I S F   P+LR K  S  +G  
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCA

Query:  LMT
        L+T
Subjt:  LMT

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC9.7e-2043.96Show/hide
Query:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIK
        Q+ LN +WPNV+  NN  FW +EW KHG CSES F+QA YF+ A+++R   +++G +R     PNG  K++Q I+  + ++FG  P LR +
Subjt:  QNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIK

P42813 Ribonuclease 14.4e-1240.74Show/hide
Query:  WPNVI--TGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        WP +   +G+   FW +EW KHG CSES  DQ  YFQ A+NL+ + NLLG +   G+ P+G   + + I   I    G  P
Subjt:  WPNVI--TGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

P42815 Ribonuclease 39.1e-1034.48Show/hide
Query:  NDLNMVWPNVITGNN--IFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        +DL   WP +   +N  + FW +EW KHG C+ES+ DQ  YF+  + L+ + NLL  +   G+ P+      + IE+ I    G  P
Subjt:  NDLNMVWPNVITGNN--IFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

P80022 Extracellular ribonuclease LE1.0e-0835.37Show/hide
Query:  WPNVI--TGNNIFFWGYEWNKHGICSESKF-DQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        WP +   +G+   FW +EW KHG C+ES   +Q  YF+KA++L+ +I+LL +++   + P+G       I + I S  G  P
Subjt:  WPNVI--TGNNIFFWGYEWNKHGICSESKF-DQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

P81477 Ribonuclease Phyb6.5e-0831.46Show/hide
Query:  DQNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPIL
        D  D   VWP+  TG+N  FW +EW+KHG C  S + +  +F   ++L  + ++   +  GG+ P     +   + S+I    GG P+L
Subjt:  DQNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPIL

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein2.7e-0933.33Show/hide
Query:  NNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        N    W +EWNKHG C +S FDQ +YF+  +  +++++LL ++   G+ PN    +   I++ I    G  P
Subjt:  NNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

AT1G14220.1 Ribonuclease T2 family protein8.5e-1134.48Show/hide
Query:  NDLNMVWPNVITGNN--IFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        + L   WP +   +N    FW +EW KHG CSES  DQ  YF+ A+ L+ + NLL +++  G+ P+       +I + I    G  P
Subjt:  NDLNMVWPNVITGNN--IFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

AT1G26820.1 ribonuclease 36.5e-1134.48Show/hide
Query:  NDLNMVWPNVITGNN--IFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        +DL   WP +   +N  + FW +EW KHG C+ES+ DQ  YF+  + L+ + NLL  +   G+ P+      + IE+ I    G  P
Subjt:  NDLNMVWPNVITGNN--IFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

AT2G02990.1 ribonuclease 13.1e-1340.74Show/hide
Query:  WPNVI--TGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP
        WP +   +G+   FW +EW KHG CSES  DQ  YFQ A+NL+ + NLLG +   G+ P+G   + + I   I    G  P
Subjt:  WPNVI--TGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDP

AT2G39780.1 ribonuclease 26.3e-0637.1Show/hide
Query:  PNVITGNNIFFWGYEWNKHGICSESKF-DQATYFQKAINLRYRINLLGVMRVGGVVPNGHLK
        P+   G    FWG+EW KHG CS   F D+  YF   +NL  + N+  V+   G V +   K
Subjt:  PNVITGNNIFFWGYEWNKHGICSESKF-DQATYFQKAINLRYRINLLGVMRVGGVVPNGHLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAAATGATTTGAACATGGTTTGGCCAAATGTGATAACGGGAAACAACATATTCTTTTGGGGTTACGAGTGGAACAAACATGGAATTTGCTCAGAAAGCAAGTT
CGACCAGGCAACATACTTCCAGAAAGCGATAAACTTGAGGTACCGTATCAATCTTCTTGGCGTCATGAGAGTTGGTGGAGTAGTACCAAACGGACACTTAAAGGCGAAGC
AAAGAATAGAAAGCTTAATCGCATCCCGTTTTGGGGGGGATCCAATTCTTCGCATCAAACTGCCAAGTCCTATTGACGGATGTGCTTTGATGACGATGCTGTCACTCCTA
TACACTGCAATAAAGCAAGTTCCAATTGTCCTGGGTGCTTTATCTTTTGAGAATAAACTCTTTCATTCTCAT
mRNA sequenceShow/hide mRNA sequence
ATGGATCAAAATGATTTGAACATGGTTTGGCCAAATGTGATAACGGGAAACAACATATTCTTTTGGGGTTACGAGTGGAACAAACATGGAATTTGCTCAGAAAGCAAGTT
CGACCAGGCAACATACTTCCAGAAAGCGATAAACTTGAGGTACCGTATCAATCTTCTTGGCGTCATGAGAGTTGGTGGAGTAGTACCAAACGGACACTTAAAGGCGAAGC
AAAGAATAGAAAGCTTAATCGCATCCCGTTTTGGGGGGGATCCAATTCTTCGCATCAAACTGCCAAGTCCTATTGACGGATGTGCTTTGATGACGATGCTGTCACTCCTA
TACACTGCAATAAAGCAAGTTCCAATTGTCCTGGGTGCTTTATCTTTTGAGAATAAACTCTTTCATTCTCAT
Protein sequenceShow/hide protein sequence
MDQNDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDQATYFQKAINLRYRINLLGVMRVGGVVPNGHLKAKQRIESLIASRFGGDPILRIKLPSPIDGCALMTMLSLL
YTAIKQVPIVLGALSFENKLFHSH