CuGenDBv2

Gene ID	CcUC10G201430
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	CicolChr10:28536365..28538289
RNA-Seq Expression	CcUC10G201430
Synteny	CcUC10G201430
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142109.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus]

5.5e-196

92.73

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPTDANPLSN-
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP    P +N 
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPTDANPLSN-

Query:  MAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSDSE
        +AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGL KPPEPIQVRHVQLDILDQDDDS + +  E
Subjt:  MAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSDSE

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

2.4e-199

93.53

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----TDANP
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----TDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGL KPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

7.1e-196

91.32

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSS TPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT SSP T LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP
        EN+SLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETS
        L+N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGL KPPEPIQVR VQLDILDQDDDS + +
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETS

Query:  DSE
          E
Subjt:  DSE

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

5.9e-190

89.3

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT S+P T LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP
        ENESLCS +TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEKTIEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD
        L+ +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGL +P EPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

1.9e-201

93.78

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP TSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVK KDD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP
        ENESLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEKTIEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMA+IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNA PGL KPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXB7 Mediator of RNA polymerase II transcription subunit 4

2.6e-196

92.73

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDVLFDDYADYQRPRR KT+ D 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPTDANPLSN-
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP    P +N 
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPTDANPLSN-

Query:  MAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSDSE
        +AAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGL KPPEPIQVRHVQLDILDQDDDS + +  E
Subjt:  MAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSDSE

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

1.1e-199

93.53

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----TDANP
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----TDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGL KPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

1.1e-199

93.53

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
        TSQT SSP T LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----TDANP
        ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP     DANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPP----TDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD
        LSNMAAIQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQLRPNALPGL KPPEPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

3.5e-196

91.32

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSS TPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT SSP T LD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKDD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP
        EN+SLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEKTIEPMIEP    PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETS
        L+N+AAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEP QLRPNALPGL KPPEPIQVR VQLDILDQDDDS + +
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEP-QLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETS

Query:  DSE
          E
Subjt:  DSE

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

4.1e-189

89.05

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT
         SQT S+P T LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT DD 
Subjt:  TSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDT

Query:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP
        ENESLCS TTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE     PTDANP
Subjt:  ENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEP----PTDANP

Query:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD
        L+ +A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLR NALPGL +P EPIQVRHVQLDILDQDDDS + + 
Subjt:  LSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSD

Query:  SE
         E
Subjt:  SE

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

2.7e-04

31.18

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Query:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESL-----
        S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  LKD E  L+       D          D   NE L     
Subjt:  STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESL-----

Query:  ----CSTTTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP
             S    V  ++   D++SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A +DV  P
Subjt:  ----CSTTTTVASQLRLSDILSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFANLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

2.5e-135

64.93

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSSTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S++  SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSSTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK
        D+L DDY+DY++P+R K ++D E   NES  S++TTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Subjt:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK

Query:  AVESTEKTIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLQKPPEP
         VE+ EK +E +IEPP     + +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GL +PP+ 
Subjt:  AVESTEKTIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLQKPPEP

Query:  IQVRHVQLDILDQDDDSKETSD
        IQVR VQLDIL+ DD S  +SD
Subjt:  IQVRHVQLDILDQDDDSKETSD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

1.8e-136

64.93

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSSTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q QPNL              S++  SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSSTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK
        D+L DDY+DY++P+R K ++D E   NES  S++TTV+SQL+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Subjt:  DVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK

Query:  AVESTEKTIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLQKPPEP
         VE+ EK +E +IEPP     + +++AI  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPP++S+   R ++ Q +RP+   GL +PP+ 
Subjt:  AVESTEKTIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLQKPPEP

Query:  IQVRHVQLDILDQDDDSKETSD
        IQVR VQLDIL+ DD S  +SD
Subjt:  IQVRHVQLDILDQDDDSKETSD

Sequences

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CDS sequence

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ATGCTTCAGCATCAAATTGTTCAGTCTCCAGCAAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCCCTTCTCAACAATC
CCACCACCAAAATCAACCCAATCTCTCTTCTTCCACCCCCTCCTCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCAT
TAGCTTCCAAGCTCTTTGAAGTCTCCCCCAACCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCACCCTTTACC
TCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCACTCTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCA
AGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCCAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGCGGATTATCAGCGACCTCGACGGGTTAAAACAAAGGATGATACCGAAAACGAGTCTTTGTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGAT
ATATTGTCATATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGGGCACTTCCCCCTGCTCCGCAAGATGAGCA
AATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAACTATAGAGCCCATGATTGAGCCTCCAACAGATG
CTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTGTTGAATTACCTAGAGATTTACCT
ATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGG
ATTGCAAAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGACGATGATAGTAAAGAAACTTCAGATTCTGAAGTCTTGAAGCAGCTGA
TGAGGATTTGTGAATTTTAA

mRNA sequence

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Protein sequence

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MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSSTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFT
SLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSD
ILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPVELPRDLP
MPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLQKPPEPIQVRHVQLDILDQDDDSKETSDSEVLKQLMRICEF

CcUC10G201430 (gene) of Watermelon (PI 537277) v1 genome