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CcUC10G201490 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G201490
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSigma factor binding protein 2
Genome locationCicolChr10:28648057..28648476
RNA-Seq ExpressionCcUC10G201490
SyntenyCcUC10G201490
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]1.2e-3383.84Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-SEGEEDEQVLLLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLN
        MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV +EGEEDEQ LL+DSS DDDF RSSYES EDILR+D+MEN GAISTSL N
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-SEGEEDEQVLLLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLN

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]2.5e-5283.22Show/hide
Query:  MDRSLVVSEVTTTT--KKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVS-EGEEDEQVL
        MDR+L+VSE+TTTT  KKKTTRKRKSC+E KQ LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVV+ +GE+DEQ L
Subjt:  MDRSLVVSEVTTTT--KKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVS-EGEEDEQVL

Query:  LLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        L+DSS DDDF+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]1.4e-5082.76Show/hide
Query:  MDRSLVVSEVTTTTKK--KTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-SEGEEDEQ
        MDRSL+VSE+TTT KK  KTTRKRKSC+E KQ LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV +EGEEDEQ
Subjt:  MDRSLVVSEVTTTTKK--KTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-SEGEEDEQ

Query:  VLLLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
         LL+DSS DDDF RSSYES EDILR+D+MEN GAISTSL N PLV
Subjt:  VLLLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]5.3e-2657.53Show/hide
Query:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVSEGEEDEQVLL--
        MDR+L+VSE+     KK TRKRK   +K Q LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+  L  
Subjt:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVSEGEEDEQVLL--

Query:  ---LDSSFDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV
           ++ S +DDF  S YESFE++L R+ LMEN    S S+ +  LV
Subjt:  ---LDSSFDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]8.5e-1647.79Show/hide
Query:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLL--
        M+ SLV  +V    +K+  RKRK CD K Q LKVVYISNPMRV  SA+EFR LVQ+LTG+DA    PS    AS E      +K+  + ++D+Q LLL  
Subjt:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLL--

Query:  ------DSSFDDDFFRSSYESFEDILRKDLMENLGA
              DSS  DDF   SYES E I  +D+++ L A
Subjt:  ------DSSFDDDFFRSSYESFEDILRKDLMENLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein6.7e-5182.76Show/hide
Query:  MDRSLVVSEVTTTTKK--KTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-SEGEEDEQ
        MDRSL+VSE+TTT KK  KTTRKRKSC+E KQ LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV +EGEEDEQ
Subjt:  MDRSLVVSEVTTTTKK--KTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-SEGEEDEQ

Query:  VLLLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
         LL+DSS DDDF RSSYES EDILR+D+MEN GAISTSL N PLV
Subjt:  VLLLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A1S3B8H6 uncharacterized protein LOC1034871671.2e-5283.22Show/hide
Query:  MDRSLVVSEVTTTT--KKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVS-EGEEDEQVL
        MDR+L+VSE+TTTT  KKKTTRKRKSC+E KQ LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVV+ +GE+DEQ L
Subjt:  MDRSLVVSEVTTTT--KKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVS-EGEEDEQVL

Query:  LLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        L+DSS DDDF+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A5D3DPQ4 Sigma factor binding protein 21.2e-5283.22Show/hide
Query:  MDRSLVVSEVTTTT--KKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVS-EGEEDEQVL
        MDR+L+VSE+TTTT  KKKTTRKRKSC+E KQ LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVV+ +GE+DEQ L
Subjt:  MDRSLVVSEVTTTT--KKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVS-EGEEDEQVL

Query:  LLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        L+DSS DDDF+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLDSSFDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like2.6e-2657.53Show/hide
Query:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVSEGEEDEQVLL--
        MDR+L+VSE+     KK TRKRK   +K Q LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+  L  
Subjt:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVSEGEEDEQVLL--

Query:  ---LDSSFDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV
           ++ S +DDF  S YESFE++L R+ LMEN    S S+ +  LV
Subjt:  ---LDSSFDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV

A0A6J1FKR4 uncharacterized protein LOC1114466398.6e-1445.86Show/hide
Query:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKV--VSEGEEDEQVLLL
        M+ SLV  +V    +K+  R RK CD K Q LKVVYISNPMRV  SA+EFR LVQELTG+DA    PS    AS   +   E  V  + + ++DEQ+LL 
Subjt:  MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKV--VSEGEEDEQVLLL

Query:  DSSFDDD---FFRSSYESFEDILRKDLMENLGA
         ++ +D    F   SYES E I  +D+++ L A
Subjt:  DSSFDDD---FFRSSYESFEDILRKDLMENLGA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.7e-0437.37Show/hide
Query:  TTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLLDSSFDDDFFRS
        ++ T+    +KRKS    K  +KV YISNPMRV T  S+FR LVQELTG+DA    PS     + ++    E ++  E  + E      S  D++ F +
Subjt:  TTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLLDSSFDDDFFRS

Q9LDH1 Sigma factor binding protein 1, chloroplastic2.6e-0749.37Show/hide
Query:  VTTTT---KKKTTRKRKSCDEKKQT------LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN
        +TTT+   KK +   RKS  +KK+T      +KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  VTTTT---KKKTTRKRKSCDEKKQT------LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.9e-0537.37Show/hide
Query:  TTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLLDSSFDDDFFRS
        ++ T+    +KRKS    K  +KV YISNPMRV T  S+FR LVQELTG+DA    PS     + ++    E ++  E  + E      S  D++ F +
Subjt:  TTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLLDSSFDDDFFRS

AT3G56710.1 sigma factor binding protein 11.8e-0849.37Show/hide
Query:  VTTTT---KKKTTRKRKSCDEKKQT------LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN
        +TTT+   KK +   RKS  +KK+T      +KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  VTTTT---KKKTTRKRKSCDEKKQT------LKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAAACCCTAAAAGTTGTG
TACATATCCAACCCCATGAGGGTTCATACTAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAATTGACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTC
TATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTATCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTTTGATGATGAT
TTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGACGACGACGAAGAAGAAAACAACACGAAAAAGGAAATCATGTGATGAAAAGAAGCAAACCCTAAAAGTTGTG
TACATATCCAACCCCATGAGGGTTCATACTAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAATTGACCGGGCGAGATGCCGAGTTTCCCGACCCGAGTAAGTTC
TATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTATCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTTTGATGATGAT
TTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCTCTGCTCAATTATCCTTTGGTTTAG
Protein sequenceShow/hide protein sequence
MDRSLVVSEVTTTTKKKTTRKRKSCDEKKQTLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVSEGEEDEQVLLLDSSFDDD
FFRSSYESFEDILRKDLMENLGAISTSLLNYPLV