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CcUC10G201550 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G201550
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionWerner Syndrome-like exonuclease
Genome locationCicolChr10:28719010..28719531
RNA-Seq ExpressionCcUC10G201550
SyntenyCcUC10G201550
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651170.1 hypothetical protein Csa_000755 [Cucumis sativus]6.9e-1260.61Show/hide
Query:  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        KLY+ Y L+V N VDLRELAA++M   + RTAGLK+LG  VLGRE+DKP+NV LS+WD + L+ +Q
Subjt:  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

KAE8651171.1 hypothetical protein Csa_002533 [Cucumis sativus]6.2e-1360.29Show/hide
Query:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        ++KLY  YGL+V+N+VDLR+LA NK+GRT LR AGLKSL   VLGRE++KPK ++LS WD   L+++Q
Subjt:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

XP_004136771.1 Werner Syndrome-like exonuclease [Cucumis sativus]6.9e-1260.61Show/hide
Query:  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        KLY+ Y L+V N VDLRELAA++M   + RTAGLK+LG  VLGRE+DKP+NV LS+WD + L+ +Q
Subjt:  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

XP_004136772.1 Werner Syndrome-like exonuclease [Cucumis sativus]6.2e-1360.29Show/hide
Query:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        ++KLY  YGL+V+N+VDLR+LA NK+GRT LR AGLKSL   VLGRE++KPK ++LS WD   L+++Q
Subjt:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

XP_038906336.1 Werner Syndrome-like exonuclease [Benincasa hispida]8.1e-1361.76Show/hide
Query:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        +++LY+ Y L V N VDLRELAAN+M R DL+ AGLK LG  VLGRE+DKP+NV+LSQWD + L   Q
Subjt:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

TrEMBL top hitse value%identityAlignment
A0A0A0LFG2 3'-5' exonuclease domain-containing protein3.0e-1360.29Show/hide
Query:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        ++KLY  YGL+V+N+VDLR+LA NK+GRT LR AGLKSL   VLGRE++KPK ++LS WD   L+++Q
Subjt:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

A0A0A0LHC5 3'-5' exonuclease domain-containing protein3.3e-1260.61Show/hide
Query:  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        KLY+ Y L+V N VDLRELAA++M   + RTAGLK+LG  VLGRE+DKP+NV LS+WD + L+ +Q
Subjt:  KLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

A0A6J1D107 Werner Syndrome-like exonuclease2.4e-1055.88Show/hide
Query:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        ++KL   YGL+V+N VDLR LA N MGR DL+ AGLK L   VLG+E+ KPK+V++S+WD E L  +Q
Subjt:  LKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

A0A6J1D121 Werner Syndrome-like exonuclease1.8e-1053.73Show/hide
Query:  KKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        +KL+D Y L+V N VDLR +A ++ GR DLR AGLK L   +LGRE+ KPK V++S+WD E L  +Q
Subjt:  KKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

A0A7N2M2Z8 3'-5' exonuclease domain-containing protein8.2e-1152.11Show/hide
Query:  ARTLKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ
        A  ++KL D Y L V N+VDLR LA +++G  DL+ AGLK L  AVLG E+ KP++V++S+WD E LD++Q
Subjt:  ARTLKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGATCCTTCTCTTTCGTCGGCGTCGGAATCCGCCAGGACGCTCAAAAAGCTCTACGACTGCTACGGGCTGAGTGTTACCAACATTGTGGATCTTAGGGAGTTGGC
TGCCAATAAGATGGGGAGAACAGACCTGAGAACTGCGGGACTGAAGAGTCTAGGGTTAGCGGTTCTCGGGAGGGAGATGGATAAGCCGAAAAATGTGAGTCTGAGTCAAT
GGGATTGCGAACGGCTGGATCATTCTCAGGATGGTCTCCTTGAGCTTTTGCAAATGGAAAATCATGTCCATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGGATCCTTCTCTTTCGTCGGCGTCGGAATCCGCCAGGACGCTCAAAAAGCTCTACGACTGCTACGGGCTGAGTGTTACCAACATTGTGGATCTTAGGGAGTTGGC
TGCCAATAAGATGGGGAGAACAGACCTGAGAACTGCGGGACTGAAGAGTCTAGGGTTAGCGGTTCTCGGGAGGGAGATGGATAAGCCGAAAAATGTGAGTCTGAGTCAAT
GGGATTGCGAACGGCTGGATCATTCTCAGGATGGTCTCCTTGAGCTTTTGCAAATGGAAAATCATGTCCATAACTGA
Protein sequenceShow/hide protein sequence
MTDPSLSSASESARTLKKLYDCYGLSVTNIVDLRELAANKMGRTDLRTAGLKSLGLAVLGREMDKPKNVSLSQWDCERLDHSQDGLLELLQMENHVHN