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CcUC10G201780 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G201780
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionS-RNase
Genome locationCicolChr10:28975012..28979815
RNA-Seq ExpressionCcUC10G201780
SyntenyCcUC10G201780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER25982.1 S-RNase [Striga asiatica]4.9e-0440.58Show/hide
Query:  DTAPGLTEAAFPGKEAAHMQIPPLKEHPARISSQLNGTCLH-ATDRALPPFGLHSRTLTSLCKSWVKMQ
        +  P LT+  FPG EA  +Q+PPL     +   +     +     R  PPFGLHSR  TS C SW K Q
Subjt:  DTAPGLTEAAFPGKEAAHMQIPPLKEHPARISSQLNGTCLH-ATDRALPPFGLHSRTLTSLCKSWVKMQ
TrEMBL top hitse value%identityAlignment
A0A5A7NZS5 S-RNase2.4e-0440.58Show/hide
Query:  DTAPGLTEAAFPGKEAAHMQIPPLKEHPARISSQLNGTCLH-ATDRALPPFGLHSRTLTSLCKSWVKMQ
        +  P LT+  FPG EA  +Q+PPL     +   +     +     R  PPFGLHSR  TS C SW K Q
Subjt:  DTAPGLTEAAFPGKEAAHMQIPPLKEHPARISSQLNGTCLH-ATDRALPPFGLHSRTLTSLCKSWVKMQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACCCATCAGACACTGTACAGAAGAATCAGAAAACCTCTTCCCTTTGAAATTTAACACCATACAGTATTCTACCAAGATTAGGACTCAAGAAAACCACAGCTATGG
AACAACCCAAGGGATTGTTATGGAACGTACCACTGAAAGCAAAGGTCCCTGCTTGAACTTGCCATGGAACGAAAATGCAACTGGCTTTGGATTGTCTCCAGTAATCTCTG
GCAAATCAACAGCTAACAGATGTGCAACTGAAGACAAAATCATTGAGAATGCATCAAATTTACAATCAAGACTCCATGACAGGGCACTAATATGTTCATCATGGCTTCGA
AGAAAATCAACTAACATAAATCGAACCCCGGAGCCTCTTGAGAATGATCCTAAGAAGGACACAGCACCAGGCCTCACAGAAGCAGCATTTCCTGGGAAAGAAGCAGCCCA
TATGCAAATTCCACCTCTGAAAGAACATCCAGCAAGAATTTCAAGTCAACTCAATGGTACTTGCTTGCATGCAACAGATAGAGCCCTCCCGCCATTTGGTCTCCACTCAA
GAACTTTAACATCTCTTTGCAAGTCGTGGGTCAAAATGCAAGGGTCTTTTCCTTCTGTTCAGAGCATAAAATACATCCATGAAACTGGTACGGGAGTGCCTCAAAGTCAG
GAAACTCGTTTGCCGGCATTTAGAAATGCTTCTGAACCACACGATTCCCTGTCAACAAATATCAGACTTACATCATTAGGACGCAAAAAACGGTTGATGGAGCCCTCGAG
GAATCCCTGCAAAGATGCAATCACACTTTTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTACCCATCAGACACTGTACAGAAGAATCAGAAAACCTCTTCCCTTTGAAATTTAACACCATACAGTATTCTACCAAGATTAGGACTCAAGAAAACCACAGCTATGG
AACAACCCAAGGGATTGTTATGGAACGTACCACTGAAAGCAAAGGTCCCTGCTTGAACTTGCCATGGAACGAAAATGCAACTGGCTTTGGATTGTCTCCAGTAATCTCTG
GCAAATCAACAGCTAACAGATGTGCAACTGAAGACAAAATCATTGAGAATGCATCAAATTTACAATCAAGACTCCATGACAGGGCACTAATATGTTCATCATGGCTTCGA
AGAAAATCAACTAACATAAATCGAACCCCGGAGCCTCTTGAGAATGATCCTAAGAAGGACACAGCACCAGGCCTCACAGAAGCAGCATTTCCTGGGAAAGAAGCAGCCCA
TATGCAAATTCCACCTCTGAAAGAACATCCAGCAAGAATTTCAAGTCAACTCAATGGTACTTGCTTGCATGCAACAGATAGAGCCCTCCCGCCATTTGGTCTCCACTCAA
GAACTTTAACATCTCTTTGCAAGTCGTGGGTCAAAATGCAAGGGTCTTTTCCTTCTGTTCAGAGCATAAAATACATCCATGAAACTGGTACGGGAGTGCCTCAAAGTCAG
GAAACTCGTTTGCCGGCATTTAGAAATGCTTCTGAACCACACGATTCCCTGTCAACAAATATCAGACTTACATCATTAGGACGCAAAAAACGGTTGATGGAGCCCTCGAG
GAATCCCTGCAAAGATGCAATCACACTTTTCCTTTGA
Protein sequenceShow/hide protein sequence
MVPIRHCTEESENLFPLKFNTIQYSTKIRTQENHSYGTTQGIVMERTTESKGPCLNLPWNENATGFGLSPVISGKSTANRCATEDKIIENASNLQSRLHDRALICSSWLR
RKSTNINRTPEPLENDPKKDTAPGLTEAAFPGKEAAHMQIPPLKEHPARISSQLNGTCLHATDRALPPFGLHSRTLTSLCKSWVKMQGSFPSVQSIKYIHETGTGVPQSQ
ETRLPAFRNASEPHDSLSTNIRLTSLGRKKRLMEPSRNPCKDAITLFL