; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC10G207190 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC10G207190
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptiontranscription factor IIIA-like
Genome locationCicolChr10:34068236..34069409
RNA-Seq ExpressionCcUC10G207190
SyntenyCcUC10G207190
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB88698.1 hypothetical protein L484_015383 [Morus notabilis]2.9e-2652.05Show/hide
Query:  DGQSKDDADVKAKGGK-SNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHE
        D   K     + KG K +N  + CGA FKKPAYLKQHMQSHS E                  SNL QH+K  +L QKPFACGF+GCSMRF YK VR++HE
Subjt:  DGQSKDDADVKAKGGK-SNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHE

Query:  KSGHHVYTNLMNNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQA
        K+  HVYT+     +  Q     RGGRKRKYP VE LI KRVT Q+
Subjt:  KSGHHVYTNLMNNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQA

XP_022139243.1 transcription factor IIIA isoform X1 [Momordica charantia]1.4e-2552.41Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ---------FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLM
        C+ CG++ K    +K+H++ H  E    G    +Q         FS+    SNLRQHMKV HL QKPF C FSGC MRFGY+HVR+NHE+SGHHVY N  
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ---------FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLM

Query:  NNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQAS-DFMMDEEC
           A  Q     RGGRKRK PTVEMLI KRVT  +  DFM++EEC
Subjt:  NNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQAS-DFMMDEEC

XP_022988268.1 transcription factor IIIA isoform X1 [Cucurbita maxima]8.4e-2654.61Show/hide
Query:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT
        C+ CG + K    +KQH+ Q H  E     +  + +  S  +  ISNL QHMKV HLGQKPFACGF GC MRFGYKHVR+NHEK G HVYTN    +A  
Subjt:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT

Query:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC
        Q     RGGRKR  PTVEMLI KR+T   S+    MMDEEC
Subjt:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC

XP_022988277.1 transcription factor IIIA isoform X2 [Cucurbita maxima]8.4e-2654.61Show/hide
Query:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT
        C+ CG + K    +KQH+ Q H  E     +  + +  S  +  ISNL QHMKV HLGQKPFACGF GC MRFGYKHVR+NHEK G HVYTN    +A  
Subjt:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT

Query:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC
        Q     RGGRKR  PTVEMLI KR+T   S+    MMDEEC
Subjt:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC

XP_038905330.1 transcription factor IIIA-like [Benincasa hispida]8.1e-3738.59Show/hide
Query:  GQSKDDADVKAKGGKSNICQDCGADFKKPAYLKQHMQSHSFE---------------------------------------MLAFGVLSSL---------
        G+ KDDAD KAKG KSNICQDCG DFKKPAYLKQHMQSHSFE                                          F  LSS+         
Subjt:  GQSKDDADVKAKGGKSNICQDCGADFKKPAYLKQHMQSHSFE---------------------------------------MLAFGVLSSL---------

Query:  -----------QF------------------------------------------------------SSHKW----------------------------
                   QF                                                      S HK+                            
Subjt:  -----------QF------------------------------------------------------SSHKW----------------------------

Query:  -----------------ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQTQ-----RGGRKRKYPTVEMLIWKRVTL
                         ISNLRQHMKV HL QKPFACGFSGCSMRFGYKHVR+NHEKSG+HVYTN     A  Q     RGGRKRK PT+EMLI KRVTL
Subjt:  -----------------ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQTQ-----RGGRKRKYPTVEMLIWKRVTL

Query:  QASDFMMDEEC
        QA DFMMDEEC
Subjt:  QASDFMMDEEC

TrEMBL top hitse value%identityAlignment
A0A6J1CCD6 transcription factor IIIA isoform X27.0e-2652.41Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ---------FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLM
        C+ CG++ K    +K+H++ H  E    G    +Q         FS+    SNLRQHMKV HL QKPF C FSGC MRFGY+HVR+NHE+SGHHVY N  
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ---------FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLM

Query:  NNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQAS-DFMMDEEC
           A  Q     RGGRKRK PTVEMLI KRVT  +  DFM++EEC
Subjt:  NNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQAS-DFMMDEEC

A0A6J1CF84 transcription factor IIIA isoform X17.0e-2652.41Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ---------FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLM
        C+ CG++ K    +K+H++ H  E    G    +Q         FS+    SNLRQHMKV HL QKPF C FSGC MRFGY+HVR+NHE+SGHHVY N  
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ---------FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLM

Query:  NNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQAS-DFMMDEEC
           A  Q     RGGRKRK PTVEMLI KRVT  +  DFM++EEC
Subjt:  NNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQAS-DFMMDEEC

A0A6J1JCM1 transcription factor IIIA isoform X24.1e-2654.61Show/hide
Query:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT
        C+ CG + K    +KQH+ Q H  E     +  + +  S  +  ISNL QHMKV HLGQKPFACGF GC MRFGYKHVR+NHEK G HVYTN    +A  
Subjt:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT

Query:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC
        Q     RGGRKR  PTVEMLI KR+T   S+    MMDEEC
Subjt:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC

A0A6J1JLR2 transcription factor IIIA isoform X14.1e-2654.61Show/hide
Query:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT
        C+ CG + K    +KQH+ Q H  E     +  + +  S  +  ISNL QHMKV HLGQKPFACGF GC MRFGYKHVR+NHEK G HVYTN    +A  
Subjt:  CQDCGADFKKPAYLKQHM-QSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYTNLMNNSAQT

Query:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC
        Q     RGGRKR  PTVEMLI KR+T   S+    MMDEEC
Subjt:  Q-----RGGRKRKYPTVEMLIWKRVTLQASD---FMMDEEC

W9RFU2 C2H2-type domain-containing protein1.4e-2652.05Show/hide
Query:  DGQSKDDADVKAKGGK-SNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHE
        D   K     + KG K +N  + CGA FKKPAYLKQHMQSHS E                  SNL QH+K  +L QKPFACGF+GCSMRF YK VR++HE
Subjt:  DGQSKDDADVKAKGGK-SNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHE

Query:  KSGHHVYTNLMNNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQA
        K+  HVYT+     +  Q     RGGRKRKYP VE LI KRVT Q+
Subjt:  KSGHHVYTNLMNNSAQTQ-----RGGRKRKYPTVEMLIWKRVTLQA

SwissProt top hitse value%identityAlignment
G5EGB2 Zinc finger transcription factor lin-293.2e-0430.12Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEK
        C  C   F   +YL QHM+ H    L         +   K+  +S+L+QH++  H G+KP+ C F+GC   F      ++H +
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKW--ISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEK

Q5ZM39 B-cell lymphoma 6 protein homolog9.4e-0432.94Show/hide
Query:  GGKSNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENH
        G K   C  CGA F +PA LK H + HS E          +F     +++LR H+ + H G+KP+ C    C  RF +    ++H
Subjt:  GGKSNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENH

Q84MZ4 Transcription factor IIIA5.2e-1839.42Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ--FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYT-----NLMNN
        C+ CG+   K   +K+H+++H  +     +   ++   S+    SNL++HMK  H   +PF CGF GC MRF YKHVR  HE SG+HVYT         +
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ--FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYT-----NLMNN

Query:  SAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC
             RGG KRK  T EML+ KRV     D    E C
Subjt:  SAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC

Q8VHT7 Transcription factor IIIA5.5e-0430.38Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENH
        C  C   FK+  YLKQHM++H+ E   +         ++  + NL+ H+   H  ++PF C  +GC   F  K     H
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENH

Q92664 Transcription factor IIIA2.5e-0430Show/hide
Query:  ICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENH
        +C+ C   FK+  YLKQHM++H+ E             ++  + NL+ H+   H   +PF C  +GC   F  K     H
Subjt:  ICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENH

Arabidopsis top hitse value%identityAlignment
AT1G72050.1 transcription factor IIIA3.7e-1939.42Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ--FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYT-----NLMNN
        C+ CG+   K   +K+H+++H  +     +   ++   S+    SNL++HMK  H   +PF CGF GC MRF YKHVR  HE SG+HVYT         +
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ--FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYT-----NLMNN

Query:  SAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC
             RGG KRK  T EML+ KRV     D    E C
Subjt:  SAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC

AT1G72050.2 transcription factor IIIA3.7e-1939.42Show/hide
Query:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ--FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYT-----NLMNN
        C+ CG+   K   +K+H+++H  +     +   ++   S+    SNL++HMK  H   +PF CGF GC MRF YKHVR  HE SG+HVYT         +
Subjt:  CQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQ--FSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFGYKHVRENHEKSGHHVYT-----NLMNN

Query:  SAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC
             RGG KRK  T EML+ KRV     D    E C
Subjt:  SAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGAAGTTAGCCAAGAGTAAATTCTTTTTAGGAGTTATTGTTTGTGCTGTGACCGTACTAGACGGACAATCGAAAGACGATGCAGATGTTAAGGCAAAAGGCGGAAAATC
CAACATTTGCCAGGATTGTGGCGCTGATTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCCTTCGAGATGCTTGCTTTTGGGGTTCTATCTTCTTTAC
AGTTCTCATCTCATAAATGGATTTCAAATCTACGCCAACACATGAAAGTTAATCACTTGGGTCAAAAACCCTTTGCATGTGGCTTTTCTGGTTGTAGCATGAGATTTGGC
TACAAGCATGTTAGGGAGAATCATGAGAAAAGTGGCCACCATGTTTACACTAATCTGATGAACAATTCTGCTCAAACCCAAAGGGGCGGACGAAAAAGAAAGTATCCGAC
CGTTGAAATGCTTATATGGAAGAGGGTTACTCTCCAAGCAAGTGATTTCATGATGGATGAGGAATGC
mRNA sequenceShow/hide mRNA sequence
TCGAAGTTAGCCAAGAGTAAATTCTTTTTAGGAGTTATTGTTTGTGCTGTGACCGTACTAGACGGACAATCGAAAGACGATGCAGATGTTAAGGCAAAAGGCGGAAAATC
CAACATTTGCCAGGATTGTGGCGCTGATTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCCTTCGAGATGCTTGCTTTTGGGGTTCTATCTTCTTTAC
AGTTCTCATCTCATAAATGGATTTCAAATCTACGCCAACACATGAAAGTTAATCACTTGGGTCAAAAACCCTTTGCATGTGGCTTTTCTGGTTGTAGCATGAGATTTGGC
TACAAGCATGTTAGGGAGAATCATGAGAAAAGTGGCCACCATGTTTACACTAATCTGATGAACAATTCTGCTCAAACCCAAAGGGGCGGACGAAAAAGAAAGTATCCGAC
CGTTGAAATGCTTATATGGAAGAGGGTTACTCTCCAAGCAAGTGATTTCATGATGGATGAGGAATGC
Protein sequenceShow/hide protein sequence
SKLAKSKFFLGVIVCAVTVLDGQSKDDADVKAKGGKSNICQDCGADFKKPAYLKQHMQSHSFEMLAFGVLSSLQFSSHKWISNLRQHMKVNHLGQKPFACGFSGCSMRFG
YKHVRENHEKSGHHVYTNLMNNSAQTQRGGRKRKYPTVEMLIWKRVTLQASDFMMDEEC