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CcUC11G208410 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G208410
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L18
Genome locationCicolChr11:369795..370139
RNA-Seq ExpressionCcUC11G208410
SyntenyCcUC11G208410
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]2.4e-4894.74Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022145949.1 uncharacterized protein LOC111015286 [Momordica charantia]8.2e-4994.74Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+ A +TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]3.1e-4894.74Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]6.9e-4893.86Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]9.0e-4892.98Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPY+LKMHFTNKYVSAQVIHS+TATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L187.5e-4892.98Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP+K   L QYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152864.0e-4994.74Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+ A +TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620251.5e-4894.74Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691425.7e-4892.11Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPYVLKMHFTNKYVSAQVIHSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679403.3e-4893.86Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPV+   LTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEK LR SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L181.0e-0944.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L181.0e-0943.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LR S+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B6EPU1 50S ribosomal protein L181.0e-0945.65Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B7VLE1 50S ribosomal protein L187.8e-1043.48Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

P52863 50S ribosomal protein L184.5e-1044.57Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein1.8e-0627.84Show/hide
Query:  YLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI
        Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + GI
Subjt:  YLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI

AT1G08845.2 Ribosomal L18p/L5e family protein1.8e-0627.84Show/hide
Query:  YLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI
        Y++P+ L +  + ++VSA + H  T    + A +  K ++  + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + GI
Subjt:  YLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI

AT3G20230.1 Ribosomal L18p/L5e family protein1.0e-0931.96Show/hide
Query:  YLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI
        Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E GI
Subjt:  YLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGI

AT3G22450.1 Ribosomal L18p/L5e family protein2.0e-0530.21Show/hide
Query:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKL
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  K  GK++ V+ ++ + G+ +
Subjt:  PYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKL

AT5G27820.1 Ribosomal L18p/L5e family protein3.9e-4175.44Show/hide
Query:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP V+   L  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAAGACTGCGGGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGTGCCCAGGTGATCCACTC
CGAAACGGCCACCGTTGCATCAGCTGCAAGTTCACAAGAGAAGGCACTGCGGTTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCGAAGATTGGAAAATTGTTGG
GAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGT
ATTAAGCTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAGTTAAGACTGCGGGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTATGTGAGTGCCCAGGTGATCCACTC
CGAAACGGCCACCGTTGCATCAGCTGCAAGTTCACAAGAGAAGGCACTGCGGTTGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCGAAGATTGGAAAATTGTTGG
GAGAGAGGCTCTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGT
ATTAAGCTGCTTTGA
Protein sequenceShow/hide protein sequence
MVIPPPVKTAGLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRLSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL