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CcUC11G209800 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G209800
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionElf4 domain-containing protein
Genome locationCicolChr11:1786087..1786512
RNA-Seq ExpressionCcUC11G209800
SyntenyCcUC11G209800
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599530.1 Protein ELF4-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3581.82Show/hide
Query:  GREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAAPGHKRNRPPP
        GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SAA PGHKRNRPPP
Subjt:  GREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAAPGHKRNRPPP

XP_016719642.1 protein ELF4-LIKE 3-like [Gossypium hirsutum]1.7e-3276.7Show/hide
Query:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAA---PGHKR
        L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS  A    G+KR
Subjt:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAA---PGHKR

Query:  NRP
        NRP
Subjt:  NRP

XP_022946747.1 protein ELF4-LIKE 3-like [Cucurbita moschata]1.7e-3575.89Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AAPGHKRNRPPP
        A PGHKRNRPPP
Subjt:  AAPGHKRNRPPP

XP_023521403.1 protein ELF4-LIKE 3-like isoform X3 [Cucurbita pepo subsp. pepo]2.9e-3575.89Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM  TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AAPGHKRNRPPP
        A PGHKRNRPPP
Subjt:  AAPGHKRNRPPP

XP_038890489.1 protein ELF4-LIKE 3-like [Benincasa hispida]2.3e-3780.53Show/hide
Query:  MEGEM----RLWKG-REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS
        MEGE      + KG REMDGKMV+TFQKNFV+VENILDQNRLLINEINQNHESK+P NLT+NV LIRELNNNIRRVVDLYADLSTSFTKS+D    DGDS
Subjt:  MEGEM----RLWKG-REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS

Query:  AAAPGHKRNRPPP
        A  PGHKRNRPPP
Subjt:  AAAPGHKRNRPPP

TrEMBL top hitse value%identityAlignment
A0A1U8LYM5 protein ELF4-LIKE 3-like8.4e-3376.7Show/hide
Query:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAA---PGHKR
        L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS  A    G+KR
Subjt:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAA---PGHKR

Query:  NRP
        NRP
Subjt:  NRP

A0A6J1G4K6 protein ELF4-LIKE 3-like8.1e-3675.89Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AAPGHKRNRPPP
        A PGHKRNRPPP
Subjt:  AAPGHKRNRPPP

A0A6J1KJ14 protein ELF4-LIKE 3-like8.1e-3675.89Show/hide
Query:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEGE      +  GR+MDGKM +TFQKNFV+V+NILDQNRLLINEINQNHESK+PDNL +NV LIRELNNNIRRVVDLYA LS SFTKS++ S S+G+SA
Subjt:  MEGEM----RLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Query:  AAPGHKRNRPPP
        A PGHKRNRPPP
Subjt:  AAPGHKRNRPPP

A0A7J9IFS5 Elf4 domain-containing protein8.4e-3376.7Show/hide
Query:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAA---PGHKR
        L  G E+D K+V+TFQKNFV+V+NILDQNRLLINEINQNHE+K+PDNLT+NV LIRELNNNIRRVVDLYADLSTS+TKS+D S+SDGDS  A    G+KR
Subjt:  LWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAA---PGHKR

Query:  NRP
        NRP
Subjt:  NRP

F6HGP9 Elf4 domain-containing protein4.9e-3372.17Show/hide
Query:  NMEGE--MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA
        NMEG+    L  G ++DGK+++TFQK+FV+V+NILDQNRLLINEINQNHESK+PDNL++NV LIRELNNNIRRVVDLYADLSTSFTKSVD S S+GDS+ 
Subjt:  NMEGE--MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA

Query:  A------PGHKRNRP
        A       GHKRNRP
Subjt:  A------PGHKRNRP

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 44.4e-1545.98Show/hide
Query:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAAPG
        D  M E   +NF +V+++LD+NR LI ++N NH+S++ DN++KNVALI+ELN NI +VV++Y+DL+TSF+       +  D   A G
Subjt:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAAPG

O80877 Protein ELF4-LIKE 12.7e-1242.35Show/hide
Query:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDP---SASDGDS
        D ++ +T    F + +  LDQNR LI  +N+NH S++PDN+++NV LI E+N NI +V+++Y+DLS +F K  D    +  DGD+
Subjt:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDP---SASDGDS

Q570U6 Protein ELF4-LIKE 41.2e-2565.31Show/hide
Query:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Subjt:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

Q8S8F5 Protein ELF4-LIKE 39.2e-2961.47Show/hide
Query:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA
        MEG+     +  G +MDGK+++TF+K+FV+V+NILD NRLLINEINQNHESK+PDNL +NV LIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+ 
Subjt:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA

Query:  APGHKRNRP
          G++R RP
Subjt:  APGHKRNRP

Q94BS8 Protein ELF4-LIKE 25.2e-2463.92Show/hide
Query:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS
        MEG++    G   +MDGK+++ FQK+FV+V++ILDQNRLLINEINQNHESK  D+L +NV LIRELNNNIR V  LY DLS SF +SVD S S+G+S
Subjt:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 48.9e-2765.31Show/hide
Query:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Subjt:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

AT1G17455.2 ELF4-like 48.9e-2765.31Show/hide
Query:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA
        MEG++    G    MDGK++++FQK+FV V++ILDQNRLLINEINQNHESK PDNL +NV LI+ELNNNIRRV  LY DLS SF +SVD S S+G+S+
Subjt:  MEGEMRLWKG--REMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSA

AT1G72630.1 ELF4-like 23.7e-2563.92Show/hide
Query:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS
        MEG++    G   +MDGK+++ FQK+FV+V++ILDQNRLLINEINQNHESK  D+L +NV LIRELNNNIR V  LY DLS SF +SVD S S+G+S
Subjt:  MEGEMRLWKGR--EMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDS

AT2G06255.1 ELF4-like 36.6e-3061.47Show/hide
Query:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA
        MEG+     +  G +MDGK+++TF+K+FV+V+NILD NRLLINEINQNHESK+PDNL +NV LIRELNNN+RRV  LY DLS +F+KS++ S S+GDS+ 
Subjt:  MEGE---MRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAA

Query:  APGHKRNRP
          G++R RP
Subjt:  APGHKRNRP

AT2G40080.1 Protein of unknown function (DUF1313)3.2e-1645.98Show/hide
Query:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAAPG
        D  M E   +NF +V+++LD+NR LI ++N NH+S++ DN++KNVALI+ELN NI +VV++Y+DL+TSF+       +  D   A G
Subjt:  DGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYADLSTSFTKSVDPSASDGDSAAAPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATGTTTGAATTTATATTATGGAAATTGCAAGTAATTATTTGTTTAATTAATATTATTGGAAGCAGGATTATTATTATAATTGGAAGTGATAATATGGAAGGGGA
GATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTTGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATG
AAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGAT
CTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGCGCCTGGCCACAAGCGCAACCGTCCTCCGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTATGTTTGAATTTATATTATGGAAATTGCAAGTAATTATTTGTTTAATTAATATTATTGGAAGCAGGATTATTATTATAATTGGAAGTGATAATATGGAAGGGGA
GATGAGATTGTGGAAAGGAAGGGAAATGGATGGGAAAATGGTTGAGACATTTCAGAAGAATTTTGTTAAAGTTGAGAATATTTTAGACCAAAACAGATTGCTGATTAATG
AAATTAACCAAAATCACGAGTCCAAATTGCCGGATAATCTCACCAAAAACGTCGCTCTAATTCGCGAGCTCAACAACAATATCAGAAGAGTTGTTGATTTGTACGCCGAT
CTCTCCACTTCCTTCACTAAATCCGTCGACCCTTCCGCCTCCGATGGAGACTCCGCCGCCGCGCCTGGCCACAAGCGCAACCGTCCTCCGCCCTAG
Protein sequenceShow/hide protein sequence
MIMFEFILWKLQVIICLINIIGSRIIIIIGSDNMEGEMRLWKGREMDGKMVETFQKNFVKVENILDQNRLLINEINQNHESKLPDNLTKNVALIRELNNNIRRVVDLYAD
LSTSFTKSVDPSASDGDSAAAPGHKRNRPPP