; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC11G210190 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G210190
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description40S ribosomal protein S30
Genome locationCicolChr11:2082109..2085142
RNA-Seq ExpressionCcUC11G210190
SyntenyCcUC11G210190
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006846 - Ribosomal protein S30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR64610.1 hypothetical protein CICLE_v10009868mg [Citrus clementina]2.5e-2673.2Show/hide
Query:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAA0061505.1 Ribosomal protein S30 [Cucumis melo var. makuwa]1.1e-3292.68Show/hide
Query:  EAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        EA +PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KDO55923.1 hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis]2.5e-2673.2Show/hide
Query:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KHN42697.1 Protein transport protein Sec16B [Glycine soja]7.3e-2688.89Show/hide
Query:  EEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        + EK ++   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

XP_004141043.2 40S ribosomal protein S30 [Cucumis sativus]3.0e-27100Show/hide
Query:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

TrEMBL top hitse value%identityAlignment
A0A067ELF8 40S ribosomal protein S30 (Fragment)1.2e-2673.2Show/hide
Query:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A0A0LFS8 40S ribosomal protein S301.4e-27100Show/hide
Query:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A5A7V6N6 40S ribosomal protein S305.1e-3392.68Show/hide
Query:  EAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        EA +PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  EAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

K3YYK8 40S ribosomal protein S301.2e-2690.41Show/hide
Query:  PEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        PE   S    AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  PEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

V4UK23 40S ribosomal protein S301.2e-2673.2Show/hide
Query:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hitse value%identityAlignment
P49689 40S ribosomal protein S302.0e-2696.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S309.9e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S309.9e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S309.9e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S309.9e-1879.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hitse value%identityAlignment
AT2G19750.1 Ribosomal protein S30 family protein1.4e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein1.4e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein1.4e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCATATTCAACCCATTGTCCACATGAGGATAGGATTGTTTTTGGACCATATAAGTAGTACAAGCGTAGAAATTGAATATGGGCTGGGCCGGCTGGATCAAATTTT
ACCGCGTGTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGCCCTTTGCGTTCTAGAGTACGAAGCCTACGAGCCGGTCGCCGAACATC
CGGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAG
AAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGAGGCATATTCAACCCATTGTCCACATGAGGATAGGATTGTTTTTGGACCATATAAGTAGTACAAGCGTAGAAATTGAATATGGGCTGGGCCGGCTGGATCAAATTTT
ACCGCGTGTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGCCCTTTGCGTTCTAGAGTACGAAGCCTACGAGCCGGTCGCCGAACATC
CGGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAG
AAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTA
AGAGACTCGAGAATTCGGCGTAACAGCCATTTTTTCTTGTTATTTGGAGATATTTTATACTTCGGATAGTACTTCTTGATGCGCTTAAGCTGATAGTTGTGTGAACGATG
ATAGTATTATTTCTTTTAGAGGTTTTTTATTTCGTCATTTGATGCTTCCCTTGCGTTTTAGTTTTGTTGTTTCACAATGAGAGAGTATCATTTTTCTTTTTGGAAAACAT
TGTTAATGGCGATAACTCGATGTTTAGATTATACCAATTTTTTGTTTCTTGCGTGTTAAGAGTTTCACAGTGTTCCTTTTTGAGGGGAAACGGTACTATTATCATAGGTT
CTCTTTATTGATTTGTTCATATATGTGGATGGCCTTTCATTGTTTGGCAATCCGACTATTTTGTCAATAATTTATTCAGCTGTGAATGCAGTGGCGATGTCCTAGCGTTT
TTCTTTTTTTTTTTTTTTTTTAGGTTTATATCGTTGGTAATTCCACCTCAAAATGACTGTCAAGGTAGAATAGAATTGTCTCACTCTCTATCTATATCCCATTTTTCTAT
CATAATCTTCGAGAACCAATTATGGTAATTTAGAAATAAGTCATTTTTTCATAATCTTCGAGAACCAATTATGGTATATTTAGAAATAAGTCATTTTAGTAAAAAATAAA
GGTGTCTGTCAAGAAACATTTTTAAAATATATTTTAAACTGTTTTTTTATGAATAGTTTAAATAGTTACTGTTTTGAAACACATTTTTCTTTTACTTCTGTCATTCCAAA
AGGGCCCACCAACGTGAATATCTCTGAAATGGTTTTGGTCTTGGGGTCAGTCTCTTTTGCCGATGTTTTAAATTCCTTTTGCTTTGGAACTGGAAGTTCGAGATTTAGTG
TTTAAAGGCCTTGAAAATTATGTCTGTACTTCATTCGTTTTTCTTTTGTGTTATGTGTAGGATGCAATGTGTTCATATAAATTGACCTTGTTTTGTTCGTGCTATAAGTT
TGTAACTGATTTGCAGATGTCCATGTATGAATGCAATACAATGTTTATAATGTTTGTATGACAATTTCAAATGTTCAAAACTCATTCGTATCCAAGTATTTGTTGTAGA
Protein sequenceShow/hide protein sequence
MRHIQPIVHMRIGLFLDHISSTSVEIEYGLGRLDQILPRVSNPLLYICLTKTLTLIFALCVLEYEAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDK
KKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK