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CcUC11G210680 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G210680
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationCicolChr11:2591053..2594508
RNA-Seq ExpressionCcUC11G210680
SyntenyCcUC11G210680
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061549.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]2.1e-3292.47Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

XP_004139345.1 uncharacterized protein LOC101209110 [Cucumis sativus]1.1e-3394.62Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

XP_008458440.1 PREDICTED: uncharacterized protein LOC103497847 isoform X1 [Cucumis melo]2.1e-3292.47Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

XP_008458447.1 PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo]7.1e-3392.55Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQV
        M+SLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQV
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQV

XP_038889658.1 uncharacterized protein LOC120079520 [Benincasa hispida]4.9e-3493.55Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLK VSRLSSRLQSLAPKFNKRSS SELSPFKS CQSQPS ASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

TrEMBL top hitse value%identityAlignment
A0A0A0LKT5 Uncharacterized protein5.3e-3494.62Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

A0A1S3C7U8 uncharacterized protein LOC103497847 isoform X11.0e-3292.47Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

A0A1S3C7Z3 uncharacterized protein LOC103497847 isoform X23.4e-3392.55Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQV
        M+SLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQV
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQV

A0A5A7V7B3 Protein NUCLEAR FUSION DEFECTIVE 61.0e-3292.47Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSRL CTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

A0A6J1G399 uncharacterized protein LOC1114503802.2e-3289.25Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+SL+AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPSAASTSR+ CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein1.0e-1355.79Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+S   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR+  + RLPVELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

AT1G55205.2 unknown protein1.0e-1355.79Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+S   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR+  + RLPVELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ

AT3G13674.1 unknown protein3.9e-1353.68Show/hide
Query:  MSSLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ
        M+S + + R SSRL+SL     NK ++ S L SP KS   + PS+A++ RL  +SRLPVELS   S++PLHSAIA++RL+SSL++ES+ WGLVPQ
Subjt:  MSSLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCCTTGAAGGCAGTCTCTCGGTTATCGTCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTG
TCAATCTCAGCCTTCCGCAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTACCAGTGGAATTGAGTAGTCAGGGGTCATTGATGCCATTACACAGCGCCATAGCTG
CAGCAAGATTGATTTCAAGTCTGACCATTGAATCTCAAAGATGGGGTTTGGTTCCACAGGTTGATGCTACAATTCATAGAACTACATCTCTTAGAATTAATGGTTTTGTC
ATGACTCATGGGTCGTCACTTAGTAAGTTTTTGGTGGCCGATGTTTCCACATCTTATAGTGACAACAAAACTACCCGAAGAAAGTATTTCAATGCCTTTATGACGGCTTT
GCTTTGCAGGAAGTTGTTCTCTGTAGTTTTCTGTTTATTGACAATTGAGGTTTCTTCTTACTTCTAG
mRNA sequenceShow/hide mRNA sequence
GACGTTTAGAGCTTGAATGCTCGATAAAACCCTTCTCTAATTCTTTGAAGCCCATTTCGTTGCAGTTCCTCAAGCTTCACTCAGAACAAGGAAGTCTCCAATGTCGTCCT
TGAAGGCAGTCTCTCGGTTATCGTCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTGTCAATCTCAG
CCTTCCGCAGCTTCTACATCGCGTCTTCCTTGCACTTCGCGGTTACCAGTGGAATTGAGTAGTCAGGGGTCATTGATGCCATTACACAGCGCCATAGCTGCAGCAAGATT
GATTTCAAGTCTGACCATTGAATCTCAAAGATGGGGTTTGGTTCCACAGGTTGATGCTACAATTCATAGAACTACATCTCTTAGAATTAATGGTTTTGTCATGACTCATG
GGTCGTCACTTAGTAAGTTTTTGGTGGCCGATGTTTCCACATCTTATAGTGACAACAAAACTACCCGAAGAAAGTATTTCAATGCCTTTATGACGGCTTTGCTTTGCAGG
AAGTTGTTCTCTGTAGTTTTCTGTTTATTGACAATTGAGGTTTCTTCTTACTTCTAGTTCATTGCCTCTGATTTTTTTTTGGTCCTAAATGTGGATGAGGTTAAAAGTCA
AATTTCATCTTGTAATGATAAATGCTTTTTATGATTAACATTTTGATCTGAAACATTCATT
Protein sequenceShow/hide protein sequence
MSSLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRLPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQRWGLVPQVDATIHRTTSLRINGFV
MTHGSSLSKFLVADVSTSYSDNKTTRRKYFNAFMTALLCRKLFSVVFCLLTIEVSSYF