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CcUC11G210800 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G210800
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionArabinogalactan protein 22, putative
Genome locationCicolChr11:2694006..2695016
RNA-Seq ExpressionCcUC11G210800
SyntenyCcUC11G210800
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]2.9e-1582.76Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MSS+KLTA P VGF FLI+LQLA+GHSH ISPA  GPSNDGAAIDQGIAYVLLL+ALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

KAF9662510.1 hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]2.1e-1063.79Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        M+SM+L A PI+GF FL LL+  +G     SPAP GPSNDG  IDQGIAYVLL++ALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

KAG5225642.1 arabinogalactan peptide [Salix suchowensis]1.4e-0960.34Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        M SM+L A PI+GF FL LL+  +G     SP P GPSNDG  IDQGIAY+LL++ALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]3.4e-1686.21Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MSS+KLTA PIVGF FLI+LQLA+GHSH ISPA AGPSNDGAAIDQGIAYVLLL+ALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

OAY53733.1 hypothetical protein MANES_03G019400v8 [Manihot esculenta]6.2e-1063.79Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MS MKL   PI+G  FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

TrEMBL top hitse value%identityAlignment
A0A059CP27 Uncharacterized protein1.5e-0979.17Show/hide
Query:  IVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        IVGF FL LLQL YG S   SPAP GPSNDG AIDQGIAY LLLVALA
Subjt:  IVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

A0A067KBQ4 Uncharacterized protein1.5e-0965.52Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MS M L A PI+GF FL LLQL +G +   SPA  GPS+DG  IDQGIAYVL+LVALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

A0A0A0LIU0 Uncharacterized protein1.6e-1686.21Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MSS+KLTA PIVGF FLI+LQLA+GHSH ISPA AGPSNDGAAIDQGIAYVLLL+ALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

A0A2C9W3S5 Uncharacterized protein3.0e-1063.79Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MS MKL   PI+G  FL L+QL+YG     SPAP GPS+DG AIDQGIA++L+LVALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

A0A5A7V7C0 Putative Arabinogalactan protein 221.4e-1582.76Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        MSS+KLTA P VGF FLI+LQLA+GHSH ISPA  GPSNDGAAIDQGIAYVLLL+ALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.1e-0446.43Show/hide
Query:  SSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL
        S   +T   +  F F ++L LA   S  ++PAPA P++DG +IDQGIAY+L++VAL
Subjt:  SSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL

Q8L9T8 Arabinogalactan protein 412.8e-0559.57Show/hide
Query:  IVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL
        IV   F ILL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL
Subjt:  IVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL

Q9FK16 Arabinogalactan protein 221.9e-0648.28Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        M+S+K     +  F  + ++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 167.5e-0646.43Show/hide
Query:  SSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL
        S   +T   +  F F ++L LA   S  ++PAPA P++DG +IDQGIAY+L++VAL
Subjt:  SSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL

AT3G61640.1 arabinogalactan protein 202.4e-0441.18Show/hide
Query:  TAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL
        + A I  F F+  +   +  +  ++PAP+ P++DG +IDQGIAY+L++VAL
Subjt:  TAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL

AT5G24105.1 arabinogalactan protein 412.0e-0659.57Show/hide
Query:  IVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL
        IV   F ILL +A  H+   +PAPA P++DG  IDQGIAYVL+LVAL
Subjt:  IVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVAL

AT5G53250.1 arabinogalactan protein 221.4e-0748.28Show/hide
Query:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA
        M+S+K     +  F  + ++ L    SH  SPAPA P++DG +IDQGIAYVL++VALA
Subjt:  MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCATGAAGCTTACCGCCGCTCCTATCGTCGGATTCACGTTCTTGATTCTTCTTCAATTGGCTTATGGTCACTCCCACCATATTTCTCCGGCACCGGCGGGTCC
TTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGGTTGCTCTTGCCTTTTTTCTCCGCTTTATTGGTGAAGAAATTGCGTTGGAGATTTGA
mRNA sequenceShow/hide mRNA sequence
AAATTTCAACTTCAATTTCACCTTCTCTGTAATCAATAGAAGAGAAACATTTTTTCAAAATTTCAGAAATTCTTCGAGTCGATTAGAAAAACATGAGTTCCATGAAGCTT
ACCGCCGCTCCTATCGTCGGATTCACGTTCTTGATTCTTCTTCAATTGGCTTATGGTCACTCCCACCATATTTCTCCGGCACCGGCGGGTCCTTCTAACGACGGAGCTGC
AATTGACCAAGGGATTGCGTACGTTCTTCTTCTGGTTGCTCTTGCCTTTTTTCTCCGCTTTATTGGTGAAGAAATTGCGTTGGAGATTTGA
Protein sequenceShow/hide protein sequence
MSSMKLTAAPIVGFTFLILLQLAYGHSHHISPAPAGPSNDGAAIDQGIAYVLLLVALAFFLRFIGEEIALEI