CuGenDBv2

Gene ID	CcUC11G215460
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	general transcription factor 3C polypeptide 6-like
Genome location	CicolChr11:7975025..7977740
RNA-Seq Expression	CcUC11G215460
Synteny	CcUC11G215460
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138617.3 general transcription factor 3C polypeptide 6 [Cucumis sativus]

1.7e-50

87.5

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKATID  SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET   SRE VEPKQA 
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        +KELK VA VHKILKFKLLDS  P+SIS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]

2.2e-50

82.09

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKA ID  SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSET+ RS +AVEP QAP
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL------DSAAPNSIS
        R++LKPVASVHKILKFKLL      DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL------DSAAPNSIS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]

1.7e-50

83.97

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKA ID  SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PS+T+ RS +AVEP QAP
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL---DSAAPNSIS
        RK+LKPVASVHKILKFKLL   DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL---DSAAPNSIS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

5.7e-51

83.58

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKA ID  SDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSET+ RS +AVEP QAP
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL------DSAAPNSIS
        RK+LKPVASVHKILKFKLL      DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL------DSAAPNSIS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

1.7e-55

91.41

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKATID   D EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEA PSE++ RSREA EPKQAP
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        RKELKPVASVHKILKFKLLDSA PNSIS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

2.4e-50

86.72

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKATID  SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET   SRE VEP+QA 
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        +KELK VA VHKILKFKLLDS  P+SIS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

1.4e-50

85.94

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKATID  S+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA PSET+  SREA EPKQA 
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLLDSAAPNSIS
        RKELK  A VHKILKFKLLDS  P+ IS
Subjt:  RKELKPVASVHKILKFKLLDSAAPNSIS

A0A6J1BZW5 uncharacterized protein LOC111006225

1.4e-50

85.5

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVV--EEEAGPSETSCRSREAVEPKQ
        MEK TID  SDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKM+GEYEETIGTCLTFAEEEV VV  EEEAGPSET  R+ EAV P +
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVV--EEEAGPSETSCRSREAVEPKQ

Query:  APRKELKPVASVHKILKFKLL-DSAAPNSIS
        APRKELKP+ASVHKILKFKLL DSA PNS S
Subjt:  APRKELKPVASVHKILKFKLL-DSAAPNSIS

A0A6J1FF13 uncharacterized protein LOC111445121

1.1e-50

82.09

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKA ID  SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PSET+ RS +AVEP QAP
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL------DSAAPNSIS
        R++LKPVASVHKILKFKLL      DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL------DSAAPNSIS

A0A6J1JTZ1 uncharacterized protein LOC111489725

8.1e-51

83.97

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Query:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP
        MEKA ID  SDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTFAEEEV +VEEEA PS+T+ RS +AVEP QAP
Subjt:  MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAP

Query:  RKELKPVASVHKILKFKLL---DSAAPNSIS
        RK+LKPVASVHKILKFKLL   DSA P+S S
Subjt:  RKELKPVASVHKILKFKLL---DSAAPNSIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

1.8e-18

47.66

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAPRKELKPVASVH
        E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K++GEY  TIGTCL F+++         G ++T              +K ++PVA +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAPRKELKPVASVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

2.5e-20

52.78

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAPRKE-LKPVASV
        EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK++GEY ETIGTCL F+E      +EE   SE            Q P K+ ++PVA +
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAPRKE-LKPVASV

Query:  HKILKFKL
        HKILKF+L
Subjt:  HKILKFKL

Sequences

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CDS sequence

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ATGGAGAAAGCTACAATTGATTGTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTACTTGACATTCCACCCAATGCTCCATATGTTCT
ATCTGGATTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATCGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAG
TCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTTGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTA
CATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAG

mRNA sequence

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TCTTACTTCAACTTCAACAACACTTCTACGTTCCCAAACAATTTACAGAATAAAAAATAAAAAGAAAAAGAATTAGAGTAAGGTAAGGCGGTCCTTCAAACCCCTTCAAC
CTTTCTCTCTCTACCCACTACGAACAAAAAAGACGTCGCCGCCTTCTTCCGTCCGACCGCCGCCCGCCTCTACTCATTCCTCCGTCTAACTTTCGACCGCCGTCTCCGAC
CGATCATCCGCCGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCGCCTGAGCTCTGACTAATTTCAAATTTTTA
TTTGATATTAGTTAGAGATATCTCAAAGGAACATGGAGAAAGCTACAATTGATTGTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTA
CTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGATTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATCGGAGAATATGAAGAAACTAT
AGGCACATGTCTTACCTTCGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTTGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTC
CTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAGTTCACTAAAGAGACTAATGTT
ATCTGTATATATAACTTTAGCATGCTTCTAAATAAACCTTTTGAAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTGTCTATAGTTAGCTGCAATGGACAG
GCAGCCTAAGAATTTGGATGAGCTTCGAG

Protein sequence

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MEKATIDCTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSCRSREAVEPKQAPRKELKPVASV
HKILKFKLLDSAAPNSIS

CcUC11G215460 (gene) of Watermelon (PI 537277) v1 genome