CuGenDBv2

Gene ID	CcUC11G215770
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	CicolChr11:8412857..8444950
RNA-Seq Expression	CcUC11G215770
Synteny	CcUC11G215770
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABR14704.1 photosystem II CP43 protein, partial [Hanguana malayana]

5.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

XP_022975445.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111474790 [Cucurbita maxima]

5.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

YP_004841779.1 photosystem II CP43 chlorophyll apoprotein [Cucumis melo subsp. melo]

5.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

YP_009456142.1 photosystem II 44 kDa protein [Lagenaria siceraria]

5.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

YP_009752916.1 photosystem II 43 kDa protein [Momordica sessilifolia]

5.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU06 Photosystem II CP43 reaction center protein

2.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

A0A1X9Q1T4 Photosystem II CP43 reaction center protein

2.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

A0A218KG40 Photosystem II CP43 reaction center protein

2.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

A0A249RZ79 Photosystem II CP43 reaction center protein

2.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

A0A6M3RWB3 Photosystem II CP43 reaction center protein

2.8e-31

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

SwissProt top hits

e value

%identity

Alignment

A4QJB1 Photosystem II CP43 reaction center protein

9.9e-34

97.01

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

A9LYI1 Photosystem II CP43 reaction center protein

9.9e-34

97.01

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

Q2QD93 Photosystem II CP43 reaction center protein

7.6e-34

98.51

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

Q3V538 Photosystem II CP43 reaction center protein

9.9e-34

97.01

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

Q70Y07 Photosystem II CP43 reaction center protein

9.9e-34

97.01

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

7.0e-35

97.01

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Query:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH
        GAFLLVFKALYFGGVYDTWAPGGGDVRK+TNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDI+GGH
Subjt:  GAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGH

Sequences

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CDS sequence

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ATGGAGGCACAACATTTGAGATTGATTCATATTAGAGGAGAGGACAGATTAGATTTATTTAGAAGACACCAATTAGAATTTCCTGATTGGTTTAGAGCACATAACCATGG
TGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGAGGAGATGTAAGAAAACTTACCAACTTGACCCTTAGCCCAAGTG
TTATATTTGGTTATTTACTAAAATCTCCTTTTGGCGGAGAAGGGTGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATAATAGAATAGAGCCGGGCAAT
ATCAAGGTTGAGAGAGAAATCACTGGTCAGAGCTCCAACTCAAATAACGAGGAAAAAAGAGTTTGTCTAACTCAGTTTCCATTTCCACCCCTGGAAAGGAGGTTTAGAAG
TCAGTATCGACCTAAAATTGGAGGTGTGGCAACTCTTCCACCGCAGACTCCACTCTCTTTAGAGTCACTCAATTTGAAGGCCTCTAGATATTATGTTATAGTATCACCAT
ATCCGTCAACACAACAAATATACTAA

mRNA sequence

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Protein sequence

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MEAQHLRLIHIRGEDRLDLFRRHQLEFPDWFRAHNHGAFLLVFKALYFGGVYDTWAPGGGDVRKLTNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHNRIEPGN
IKVEREITGQSSNSNNEEKRVCLTQFPFPPLERRFRSQYRPKIGGVATLPPQTPLSLESLNLKASRYYVIVSPYPSTQQIY

CcUC11G215770 (gene) of Watermelon (PI 537277) v1 genome