CuGenDBv2

Gene ID	CcUC11G219700
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Chlorophyll A-B binding protein
Genome location	CicolChr11:23513928..23517577
RNA-Seq Expression	CcUC11G219700
Synteny	CcUC11G219700
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR023329 - Chlorophyll a/b binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008451793.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo]

1.4e-49

92.04

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Query:  SRWGWSRDQDVGKCTHRMRGQAFRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL
        SR GWSRDQDVG+ THR RGQAFRISN SP KDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL
Subjt:  SRWGWSRDQDVGKCTHRMRGQAFRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL

Query:  ADYFSFIINFFVR
        ADYFS +INFF+R
Subjt:  ADYFSFIINFFVR

XP_022937785.1 uncharacterized protein LOC111444076 isoform X2 [Cucurbita moschata]

1.0e-47

83.33

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Query:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG
        V FPSRWGW+RDQDVGK THR RGQAFRI    N SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTG
Subjt:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG

Query:  KGILAQLADYFSFIINFFVR
        KGILAQLA Y + ++NFFVR
Subjt:  KGILAQLADYFSFIINFFVR

XP_022969696.1 uncharacterized protein LOC111468645 isoform X2 [Cucurbita maxima]

5.1e-47

82.5

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Query:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG
        V FPSRWGWSRD+DVG  THR RGQAFRI    N SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTG
Subjt:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG

Query:  KGILAQLADYFSFIINFFVR
        KGILAQLA Y + ++NFFVR
Subjt:  KGILAQLADYFSFIINFFVR

XP_023538319.1 uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo]

2.5e-46

84.48

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Query:  SRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL
        SRWGW+RDQDVGK THR RGQAFRI    N SPGKD LIKQVIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGIL
Subjt:  SRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL

Query:  AQLADYFSFIINFFVR
        AQLA Y + ++NFFVR
Subjt:  AQLADYFSFIINFFVR

XP_023538320.1 uncharacterized protein LOC111799137 isoform X2 [Cucurbita pepo subsp. pepo]

2.7e-48

84.17

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Query:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG
        V FPSRWGW+RDQDVGK THR RGQAFRI    N SPGKD LIKQVIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTG
Subjt:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG

Query:  KGILAQLADYFSFIINFFVR
        KGILAQLA Y + ++NFFVR
Subjt:  KGILAQLADYFSFIINFFVR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH95 Uncharacterized protein

1.8e-45

87.61

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Query:  SRWGWSRDQDVGKCTHRMRGQAFRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL
        SR GWSR  D G+ T R RGQAFRISN SPG+DGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQL
Subjt:  SRWGWSRDQDVGKCTHRMRGQAFRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL

Query:  ADYFSFIINFFVR
        ADYFS +INFF+R
Subjt:  ADYFSFIINFFVR

A0A1S3BSE0 uncharacterized protein LOC103492970 isoform X1

6.9e-50

92.04

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Query:  SRWGWSRDQDVGKCTHRMRGQAFRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL
        SR GWSRDQDVG+ THR RGQAFRISN SP KDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL
Subjt:  SRWGWSRDQDVGKCTHRMRGQAFRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL

Query:  ADYFSFIINFFVR
        ADYFS +INFF+R
Subjt:  ADYFSFIINFFVR

A0A6J1FC77 uncharacterized protein LOC111444076 isoform X1

4.6e-46

83.62

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Query:  SRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL
        SRWGW+RDQDVGK THR RGQAFRI    N SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGIL
Subjt:  SRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL

Query:  AQLADYFSFIINFFVR
        AQLA Y + ++NFFVR
Subjt:  AQLADYFSFIINFFVR

A0A6J1FHS7 uncharacterized protein LOC111444076 isoform X2

4.9e-48

83.33

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Query:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG
        V FPSRWGW+RDQDVGK THR RGQAFRI    N SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTG
Subjt:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG

Query:  KGILAQLADYFSFIINFFVR
        KGILAQLA Y + ++NFFVR
Subjt:  KGILAQLADYFSFIINFFVR

A0A6J1HYI7 uncharacterized protein LOC111468645 isoform X2

2.5e-47

82.5

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Query:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG
        V FPSRWGWSRD+DVG  THR RGQAFRI    N SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTG
Subjt:  VPFPSRWGWSRDQDVGKCTHRMRGQAFRI---SNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTG

Query:  KGILAQLADYFSFIINFFVR
        KGILAQLA Y + ++NFFVR
Subjt:  KGILAQLADYFSFIINFFVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G28025.1 unknown protein

5.3e-26

57.39

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Query:  GWSRDQDVGKCTHRMRGQAFRI---SNAS----PGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI
        G  R QD     +R R    R+    N S    PGK  + K+VIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGI
Subjt:  GWSRDQDVGKCTHRMRGQAFRI---SNAS----PGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI

Query:  LAQLADYFSFIINFF
        LAQLA Y+S +++ F
Subjt:  LAQLADYFSFIINFF

AT4G28025.2 unknown protein.

3.1e-26

57.26

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Query:  RWGWSRDQDVGKCTHRMRGQAFRI---SNAS----PGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGK
        R G  R QD     +R R    R+    N S    PGK  + K+VIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGK
Subjt:  RWGWSRDQDVGKCTHRMRGQAFRI---SNAS----PGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGK

Query:  GILAQLADYFSFIINFF
        GILAQLA Y+S +++ F
Subjt:  GILAQLADYFSFIINFF

Sequences

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CDS sequence

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ATGACAAAGGCTGAACAAGAGAGGGGAGGCAAGGACTTCCACCTAAGGACCAAGAGGATACAAAAAGGAGGTCCAATTGATCAAGCGCCTTGGAAAGCATGGATGAGGCA
CATGTCACGAATGGAATCCCAAATCCGAGTCACGAAAGCACCATTGCAAGCCAAAAGTCTGGAAAAGATTAGCCCAATGGCTAGTGGCGACAGCATAGTAAATGGTATTT
TGTCGCTGCTAATTGCTGTATCATTTTTGATAGTTCCTTTCCCTTCCAGGTGGGGCTGGAGTAGGGACCAAGATGTTGGCAAATGTACTCACAGAATGAGGGGTCAAGCA
TTTCGAATCTCTAATGCCTCTCCTGGTAAAGATGGCTTAATCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCAGCGAAAGAAATGGAAAAGATCAA
AGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATCAATGGAGCATGGGCCATGATCGGTCTGACAGCAGGGCTTGTTATCGAAGGTCAAACCGGAAAAGGCA
TTCTAGCACAGTTGGCCGACTACTTCAGCTTCATTATCAACTTCTTCGTACGACAGTGGGATGAAGCAGCAGATTCAGATGGTCTTGTTTTGGAGGATTCTATTGGCAAA
TAG

mRNA sequence

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Protein sequence

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MTKAEQERGGKDFHLRTKRIQKGGPIDQAPWKAWMRHMSRMESQIRVTKAPLQAKSLEKISPMASGDSIVNGILSLLIAVSFLIVPFPSRWGWSRDQDVGKCTHRMRGQA
FRISNASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSFIINFFVRQWDEAADSDGLVLEDSIGK

CcUC11G219700 (gene) of Watermelon (PI 537277) v1 genome