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CcUC11G219830 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G219830
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCicolChr11:23931986..23932263
RNA-Seq ExpressionCcUC11G219830
SyntenyCcUC11G219830
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035248.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.1e-0658.7Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.2e-0660.87Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.2e-0660.87Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
TYK22403.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.1e-0658.7Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0558.7Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HLI W I  +PK +GG+GI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
TrEMBL top hitse value%identityAlignment
A0A5A7SXB2 LINE-1 retrotransposable element ORF2 protein3.9e-0658.7Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein3.0e-0660.87Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein3.0e-0660.87Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HLI W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
A0A5D3DFS9 LINE-1 retrotransposable element ORF2 protein3.9e-0658.7Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HL+ W I  +PK +GGLGI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein5.1e-0658.7Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R+FLW  SE    +HLI W I  +PK +GG+GI KLK TN ALLCK
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.5e-0441.3Show/hide
Query:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
        R FLW  + +    HL++W  V +PK  GGLG+   K+ N AL+ K
Subjt:  RNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCK
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATTTCCTTTGGGAATGTTCAGAAAAAATTGGTGCATCACACCTTATCCGTTGGGAAATTGTCATCACCCCAAAAACCATGGGAGGCCTTGGGATCGAG
AAATTAAAAACTACAAATTCTGCTCTGTTATGCAAAAGACAACTGGTTGTGATTGATGCCAAGTACAAAGCCGATCAACTAGATCTATTCCATCCATATGCAATC
ATAGCAGTTCAAAATCCCCTTGGTTCAATATTGCTAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATTTCCTTTGGGAATGTTCAGAAAAAATTGGTGCATCACACCTTATCCGTTGGGAAATTGTCATCACCCCAAAAACCATGGGAGGCCTTGGGATCGAG
AAATTAAAAACTACAAATTCTGCTCTGTTATGCAAAAGACAACTGGTTGTGATTGATGCCAAGTACAAAGCCGATCAACTAGATCTATTCCATCCATATGCAATC
ATAGCAGTTCAAAATCCCCTTGGTTCAATATTGCTAGACTAA
Protein sequenceShow/hide protein sequence
MRNFLWECSEKIGASHLIRWEIVITPKTMGGLGIEKLKTTNSALLCKRQLVVIDAKYKADQLDLFHPYAIIAVQNPLGSILLD