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CcUC11G220730 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G220730
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCicolChr11:25197707..25198476
RNA-Seq ExpressionCcUC11G220730
SyntenyCcUC11G220730
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066598.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.7e-2342.2Show/hide
Query:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------
        + IQ+QLQGI QAP D+ E++WISF+YID FTL                                                                   
Subjt:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------

Query:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
                    DGIHIG SIGI VINTN+ TGDDCISLGD S QV ITNVTCGPGHGISVGSL RY+ EAPV
Subjt:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

XP_008465833.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]1.7e-2342.2Show/hide
Query:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------
        + IQ+QLQGI QAP D+ E++WISF+YID FTL                                                                   
Subjt:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------

Query:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
                    DGIHIG SIGI VINTN+ TGDDCISLGD S QV ITNVTCGPGHGISVGSL RY+ EAPV
Subjt:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

XP_011659855.2 exopolygalacturonase-like [Cucumis sativus]1.7e-1880.33Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG SIGI VINT +STGDDCISLGD S QV ITNVTC PGHGISVGSL RY+ E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

XP_011659855.2 exopolygalacturonase-like [Cucumis sativus]4.5e-0368.75Show/hide
Query:  HIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL
        HIQ+QLQGI QAP+D++ ++WISFQ ID FTL
Subjt:  HIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL

XP_011659855.2 exopolygalacturonase-like [Cucumis sativus]6.4e-1877.05Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S+GI VINT + TGDDCISLGD S QV ITNVTC PGHGISVGSL RY+ E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

XP_038889253.1 exopolygalacturonase-like [Benincasa hispida]2.3e-2341.04Show/hide
Query:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------
        +HIQ+QL+GI +API+++ EHWISFQYID FTL                                                                   
Subjt:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------

Query:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
                    DGIHI  SIGI V NTN+STGDDCISLGD S QV ITN+TCGPGHGISVGSL +Y++EAPV
Subjt:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

TrEMBL top hitse value%identityAlignment
A0A0A0KNH7 Uncharacterized protein3.1e-1877.05Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S+GI VINT + TGDDCISLGD S QV ITNVTC PGHGISVGSL RY+ E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

A0A1S3CPS4 exopolygalacturonase-like8.4e-2442.2Show/hide
Query:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------
        + IQ+QLQGI QAP D+ E++WISF+YID FTL                                                                   
Subjt:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------

Query:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
                    DGIHIG SIGI VINTN+ TGDDCISLGD S QV ITNVTCGPGHGISVGSL RY+ EAPV
Subjt:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

A0A5A7T7B3 Exopolygalacturonase-like5.3e-1877.05Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S+GI ++NTN+ TGDDCISLGD S QV ITNVTCGPGHGISVGSL RY  E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

A0A5A7VFS7 Exopolygalacturonase-like8.4e-2442.2Show/hide
Query:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------
        + IQ+QLQGI QAP D+ E++WISF+YID FTL                                                                   
Subjt:  HHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTL-------------------------------------------------------------------

Query:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
                    DGIHIG SIGI VINTN+ TGDDCISLGD S QV ITNVTCGPGHGISVGSL RY+ EAPV
Subjt:  -----------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

A0A6A6KWN1 Uncharacterized protein4.0e-1840Show/hide
Query:  IQMQLQGIFQAPIDIMEEHWISFQYIDHFTL--------------------------------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVII
        I++++QG  QAP D+  E W +F ++D FT+                                 DGIHIG S G+ +I+T + TGDDCIS+GD +  + +
Subjt:  IQMQLQGIFQAPIDIMEEHWISFQYIDHFTL--------------------------------PDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVII

Query:  TNVTCGPGHGISVGSLERYISEAPV
        + VTCGPGHGIS+GSL RY +E PV
Subjt:  TNVTCGPGHGISVGSLERYISEAPV

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)8.7e-1868.85Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S G+ +INT + TGDDCISLGD S  + ITN+TCGPGHGISVGSL RY +E  V
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

P49063 Exopolygalacturonase clone GBGA4831.1e-1559.02Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S G+ +I   + TGDDC+S+GD +  +I+ NV CGPGHGIS+GSL RY +E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

Q39766 Polygalacturonase1.2e-1454.1Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIH+G S G+ +I +++ TGDDCIS+GD +  ++I  +TCGPGHGIS+GSL ++ +E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

Q40312 Polygalacturonase6.9e-1554.1Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIH+G S  + ++NTN+ TGDDC+S+GD S Q+ +  V CGPGHG+SVGSL ++ +E  V
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

Q6H9K0 Exopolygalacturonase (Fragment)9.6e-1750.57Show/hide
Query:  IDIMEEHWISFQYIDHFTLP------DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        I+++E   I+FQ++   T P      DGIH+G S G+ + NT ++TGDDCIS+G  S  V IT V CGPGHGIS+GSL RY +E  V
Subjt:  IDIMEEHWISFQYIDHFTLP------DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

Arabidopsis top hitse value%identityAlignment
AT3G07830.1 Pectin lyase-like superfamily protein5.8e-1759.02Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIH+G S+G+ +IN+ +STGDDC+S+GD    +++ NV CGPGHGISVGSL RY  E  V
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

AT3G07840.1 Pectin lyase-like superfamily protein4.9e-1657.38Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIH+G S G+ ++N+ ++TGDDCIS+GD    + + NV CGPGHGISVGSL RY+ E  V
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

AT3G07850.1 Pectin lyase-like superfamily protein7.5e-1759.02Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S G+ +I   + TGDDC+S+GD +  +I+ NV CGPGHGIS+GSL RY +E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

AT3G14040.1 Pectin lyase-like superfamily protein7.5e-1759.02Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIHIG S G+ +I   + TGDDC+S+GD +  +I+ NV CGPGHGIS+GSL RY +E PV
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV

AT5G48140.1 Pectin lyase-like superfamily protein3.7e-1659.02Show/hide
Query:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV
        DGIH+G S GI +IN+ +STGDDC+S+GD    +++  VTCGPGHGIS+GSL RY  E  V
Subjt:  DGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGTACACCATATCCAAATGCAACTCCAAGGAATTTTTCAGGCTCCCATAGATATTATGGAAGAACATTGGATTAGTTTCCAATACATCGATCACTTTACATTGCC
AGATGGAATTCACATCGGTTGTTCAATTGGGATTATTGTTATAAATACAAACGTGAGTACTGGAGATGATTGTATCTCACTTGGAGATGCTAGTCATCAAGTAATAATCA
CTAACGTAACATGTGGGCCTGGGCATGGTATAAGTGTAGGAAGTTTAGAAAGATATATTTCTGAAGCACCCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTGTACACCATATCCAAATGCAACTCCAAGGAATTTTTCAGGCTCCCATAGATATTATGGAAGAACATTGGATTAGTTTCCAATACATCGATCACTTTACATTGCC
AGATGGAATTCACATCGGTTGTTCAATTGGGATTATTGTTATAAATACAAACGTGAGTACTGGAGATGATTGTATCTCACTTGGAGATGCTAGTCATCAAGTAATAATCA
CTAACGTAACATGTGGGCCTGGGCATGGTATAAGTGTAGGAAGTTTAGAAAGATATATTTCTGAAGCACCCGTTTAA
Protein sequenceShow/hide protein sequence
MRVHHIQMQLQGIFQAPIDIMEEHWISFQYIDHFTLPDGIHIGCSIGIIVINTNVSTGDDCISLGDASHQVIITNVTCGPGHGISVGSLERYISEAPV