; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CcUC11G224340 (gene) of Watermelon (PI 537277) v1 genome

Gene IDCcUC11G224340
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNase H domain-containing protein
Genome locationCicolChr11:28806595..28807464
RNA-Seq ExpressionCcUC11G224340
SyntenyCcUC11G224340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591792.1 hypothetical protein SDJN03_14138, partial [Cucurbita argyrosperma subsp. sororia]2.6e-7586.21Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEM-ATETAEKNSLKKATSNLKKKLL
        MN++ W+DD  KERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLD+ITPIKLPSD EM A+ TAEKNSLKKATSNLKKKLL
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEM-ATETAEKNSLKKATSNLKKKLL

Query:  SNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        SNG SI FGISKSNRKMK+MKNKKLA+DFSP P Q  ACYP NKK WSKLL+AATKHF KKKKKDP SQMKLYF
Subjt:  SNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

XP_022936857.1 uncharacterized protein LOC111443318 [Cucurbita moschata]2.7e-7282.95Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK
        MN++ W+DD  KERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLD+ITPIKLPSD EM       AEKNSLK+ATSNLKKK
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK

Query:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        LLSNG SI FGISKSNRKMK+MKNKKLA+DFSP P Q  ACYP NKK WSKLL+AATKHF KKKKKDP SQMKLYF
Subjt:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

XP_022976862.1 uncharacterized protein LOC111477106 [Cucurbita maxima]8.5e-7484.09Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK
        MN++ W+DD  KERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLD+ITPIKLPSD EMA     TAEKNSLKKATSNLKKK
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK

Query:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        LLSNG SI FGISKSNRKMK+MKNKKLA+DFSP P Q  ACYP NKK WSKLL+AATKHF KKKKKDP +QMKLYF
Subjt:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

XP_023536350.1 uncharacterized protein LOC111797546 [Cucurbita pepo subsp. pepo]2.2e-7484.57Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMA--TETAEKNSLKKATSNLKKKL
        MN++ W+DD  KERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLD+ITPIKLPSD EMA  + T EKNSLKKATSNLKKKL
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMA--TETAEKNSLKKATSNLKKKL

Query:  LSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        LSNG SI FGISKSNRKMK+MKNKK+A+DFSP P Q  ACYP NKK WSKLL+AATKHF KKKKKDP SQMKLYF
Subjt:  LSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

XP_038898299.1 uncharacterized protein LOC120085999 [Benincasa hispida]1.1e-7889.71Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE-TAEKNSLKKATSNLKKKLL
        MNLQ  +DD  +ERLIKVVEYLEP MSK+LLCKFPDNSAFDF+YSQSTIWSPLVPRPYHSMDLDVITPIKLPSD EMATE TAEKNSL+KATSNLKKKLL
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE-TAEKNSLKKATSNLKKKLL

Query:  SNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHF-KKKKKKDPTSQMKLYF
         NGFSI FGISKSNRKM RMKNKKLASDFSPTP QGGACYP NKKGWSKLLRAATKHF KKKKKKDPTSQMKLYF
Subjt:  SNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHF-KKKKKKDPTSQMKLYF

TrEMBL top hitse value%identityAlignment
A0A0A0L354 Uncharacterized protein2.3e-7285.14Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMA--TETAEKNSLKKATSNLKKKL
        MNLQ W+DD  +ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY+SMDLDVITPIKLPSD E A  T  A KNS KKATSNL+KK 
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMA--TETAEKNSLKKATSNLKKKL

Query:  LSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        L NGFS+ FGISKS RK   MKNKKL SDFSPTP QGGACYP NKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
Subjt:  LSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

A0A5D3DWX3 Uncharacterized protein3.9e-7285.55Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLS
        MNLQ W+DD  +ERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY+SMDLDVITPIKLPSD    T  AEKNS KKATSNLKKKLLS
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLS

Query:  NGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        N FSIGFGISKS RK   MKN KL SDFSP+P +GGACYP NKKGWSKLLRAATKHFKKKKKKDPTS MKLYF
Subjt:  NGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

A0A6J1CL72 uncharacterized protein LOC1110121798.6e-7280.57Show/hide
Query:  MNLQYWQDD-GAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLL
        MN+Q W+DD   K+RLIKVVEYLEP+M+KELLCKFPDNSAFDFDYSQSTIWSPLVPR Y+SMDLD ITPIKLPSD EMA E  +K+SLKKATSNLKKKLL
Subjt:  MNLQYWQDD-GAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLL

Query:  SNGFSIGFGISKSNRKMKRMKNKKLASDFSPTP-QQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
         NGF++ FG+SKS RK+KRMKNKK+ASDFSPTP Q  G+CYP NKKGWSKLL+AATKHFKKKKKKDP SQMKL+F
Subjt:  SNGFSIGFGISKSNRKMKRMKNKKLASDFSPTP-QQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

A0A6J1F9I6 uncharacterized protein LOC1114433181.3e-7282.95Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK
        MN++ W+DD  KERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLD+ITPIKLPSD EM       AEKNSLK+ATSNLKKK
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK

Query:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        LLSNG SI FGISKSNRKMK+MKNKKLA+DFSP P Q  ACYP NKK WSKLL+AATKHF KKKKKDP SQMKLYF
Subjt:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

A0A6J1IGW0 uncharacterized protein LOC1114771064.1e-7484.09Show/hide
Query:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK
        MN++ W+DD  KERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPY SMDLD+ITPIKLPSD EMA     TAEKNSLKKATSNLKKK
Subjt:  MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATE---TAEKNSLKKATSNLKKK

Query:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF
        LLSNG SI FGISKSNRKMK+MKNKKLA+DFSP P Q  ACYP NKK WSKLL+AATKHF KKKKKDP +QMKLYF
Subjt:  LLSNGFSIGFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G15140.1 unknown protein2.8e-2242.31Show/hide
Query:  KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKM
        KVVEYL+P+M +ELLCKFPDNSAF FDYSQS++WSPL+PR Y S           PSDL+  +++    +LK     + KK      S+     K N+K 
Subjt:  KVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSIGFGISKSNRKM

Query:  KRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKK-KKKKDPTSQMKL
         ++    + S  +        C+P   KGW+ +L+AA+KHFKK KKK+D  +  KL
Subjt:  KRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKK-KKKKDPTSQMKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGCAGTATTGGCAAGATGACGGGGCGAAGGAGAGACTGATCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCA
GATAACTCCGCCTTCGATTTTGATTACTCTCAGAGCACCATCTGGTCTCCTTTGGTCCCTCGGCCTTACCATTCCATGGATTTGGATGTAATTACTCCCATCAAG
CTTCCTTCTGATTTGGAAATGGCGACGGAGACGGCTGAGAAGAACAGCTTGAAAAAAGCCACCTCCAACCTCAAGAAGAAACTTCTCTCCAATGGCTTCAGCATC
GGTTTCGGCATTTCGAAAAGCAACAGGAAGATGAAGAGGATGAAGAACAAGAAATTGGCGTCTGATTTCTCCCCCACTCCTCAGCAAGGTGGTGCTTGCTATCCA
AGGAACAAAAAGGGATGGAGCAAGTTACTCAGAGCAGCCACCAAGCATTTCAAAAAGAAGAAGAAGAAGGATCCCACTTCTCAAATGAAACTCTATTTCTAA
mRNA sequenceShow/hide mRNA sequence
CACAAGCCCACAACCAATCTGCTATTCCAACGGTCACTTTTCACTGTCTGCTTCCTTCTATTCTCTTCCCTTTCCCCTTTCTCTCCACACCATTAAAAAAGAGAT
CCCATCTGCAAATCCAGAAGAGGAAGAAGAACAACAGAGAAAGATTCAAGCTTTTTAGCTGAGACACAACTCAAAAGAAGAAGAAGAAGATCTCAAATGAATTTG
CAGTATTGGCAAGATGACGGGGCGAAGGAGAGACTGATCAAAGTGGTGGAGTATTTGGAGCCATTGATGTCCAAAGAGCTTCTCTGCAAATTCCCAGATAACTCC
GCCTTCGATTTTGATTACTCTCAGAGCACCATCTGGTCTCCTTTGGTCCCTCGGCCTTACCATTCCATGGATTTGGATGTAATTACTCCCATCAAGCTTCCTTCT
GATTTGGAAATGGCGACGGAGACGGCTGAGAAGAACAGCTTGAAAAAAGCCACCTCCAACCTCAAGAAGAAACTTCTCTCCAATGGCTTCAGCATCGGTTTCGGC
ATTTCGAAAAGCAACAGGAAGATGAAGAGGATGAAGAACAAGAAATTGGCGTCTGATTTCTCCCCCACTCCTCAGCAAGGTGGTGCTTGCTATCCAAGGAACAAA
AAGGGATGGAGCAAGTTACTCAGAGCAGCCACCAAGCATTTCAAAAAGAAGAAGAAGAAGGATCCCACTTCTCAAATGAAACTCTATTTCTAAAACAATGTTTCA
TAGAATCATATAATCTAC
Protein sequenceShow/hide protein sequence
MNLQYWQDDGAKERLIKVVEYLEPLMSKELLCKFPDNSAFDFDYSQSTIWSPLVPRPYHSMDLDVITPIKLPSDLEMATETAEKNSLKKATSNLKKKLLSNGFSI
GFGISKSNRKMKRMKNKKLASDFSPTPQQGGACYPRNKKGWSKLLRAATKHFKKKKKKDPTSQMKLYF